Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003808A_C01 KMC003808A_c01
(648 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200511.1| putative protein; protein id: At5g57010.1 [Arab... 110 1e-23
dbj|BAA97031.1| gb|AAC14530.1~gene_id:MHM17.13~strong similarity... 110 1e-23
dbj|BAC42905.1| unknown protein [Arabidopsis thaliana] 110 1e-23
pir||T05313 hypothetical protein F26P21.170 - Arabidopsis thalia... 108 8e-23
ref|NP_565618.1| expressed protein; protein id: At2g26190.1, sup... 103 3e-21
>ref|NP_200511.1| putative protein; protein id: At5g57010.1 [Arabidopsis thaliana]
Length = 495
Score = 110 bits (276), Expect = 1e-23
Identities = 51/72 (70%), Positives = 59/72 (81%)
Frame = -3
Query: 646 SCKWSTGAGPRIGCVRDYPEHSQSRAMEQVNLSPRPTSALLNKRCPIPSPRPSPKVRMSP 467
SCKWSTG GPRIGCVRDYP Q+RA+EQVNLSPR + + PIPSPRPSPK+R+SP
Sbjct: 424 SCKWSTGNGPRIGCVRDYPMDLQTRALEQVNLSPRVVNGTMGLFGPIPSPRPSPKIRVSP 483
Query: 466 RLAYMGLPSPRN 431
RL+ MGLPSPR+
Sbjct: 484 RLSCMGLPSPRH 495
>dbj|BAA97031.1| gb|AAC14530.1~gene_id:MHM17.13~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 458
Score = 110 bits (276), Expect = 1e-23
Identities = 51/72 (70%), Positives = 59/72 (81%)
Frame = -3
Query: 646 SCKWSTGAGPRIGCVRDYPEHSQSRAMEQVNLSPRPTSALLNKRCPIPSPRPSPKVRMSP 467
SCKWSTG GPRIGCVRDYP Q+RA+EQVNLSPR + + PIPSPRPSPK+R+SP
Sbjct: 387 SCKWSTGNGPRIGCVRDYPMDLQTRALEQVNLSPRVVNGTMGLFGPIPSPRPSPKIRVSP 446
Query: 466 RLAYMGLPSPRN 431
RL+ MGLPSPR+
Sbjct: 447 RLSCMGLPSPRH 458
>dbj|BAC42905.1| unknown protein [Arabidopsis thaliana]
Length = 87
Score = 110 bits (276), Expect = 1e-23
Identities = 51/72 (70%), Positives = 59/72 (81%)
Frame = -3
Query: 646 SCKWSTGAGPRIGCVRDYPEHSQSRAMEQVNLSPRPTSALLNKRCPIPSPRPSPKVRMSP 467
SCKWSTG GPRIGCVRDYP Q+RA+EQVNLSPR + + PIPSPRPSPK+R+SP
Sbjct: 16 SCKWSTGNGPRIGCVRDYPMDLQTRALEQVNLSPRVVNGTMGLFGPIPSPRPSPKIRVSP 75
Query: 466 RLAYMGLPSPRN 431
RL+ MGLPSPR+
Sbjct: 76 RLSCMGLPSPRH 87
>pir||T05313 hypothetical protein F26P21.170 - Arabidopsis thaliana
gi|3688186|emb|CAA21214.1| putative protein [Arabidopsis
thaliana] gi|7270252|emb|CAB80022.1| putative protein
[Arabidopsis thaliana]
Length = 488
Score = 108 bits (269), Expect = 8e-23
Identities = 51/71 (71%), Positives = 60/71 (83%)
Frame = -3
Query: 646 SCKWSTGAGPRIGCVRDYPEHSQSRAMEQVNLSPRPTSALLNKRCPIPSPRPSPKVRMSP 467
SCKW++G GPRIGCVRDYP Q++A+EQV+LSPR + A N PIPSPRPSPKVR+SP
Sbjct: 416 SCKWTSGYGPRIGCVRDYPMELQAQALEQVSLSPRVSPA--NSYGPIPSPRPSPKVRVSP 473
Query: 466 RLAYMGLPSPR 434
RLAYMG+PSPR
Sbjct: 474 RLAYMGIPSPR 484
>ref|NP_565618.1| expressed protein; protein id: At2g26190.1, supported by cDNA:
gi_16930468, supported by cDNA: gi_20453236 [Arabidopsis
thaliana] gi|25367179|pir||E84657 hypothetical protein
At2g26190 [imported] - Arabidopsis thaliana
gi|3075398|gb|AAC14530.1| expressed protein [Arabidopsis
thaliana] gi|16930469|gb|AAL31920.1|AF419588_1
At2g26190/T1D16.17 [Arabidopsis thaliana]
gi|20453237|gb|AAM19857.1| At2g26190/T1D16.17
[Arabidopsis thaliana] gi|22135809|gb|AAM91091.1|
At2g26190/T1D16.17 [Arabidopsis thaliana]
Length = 532
Score = 103 bits (256), Expect = 3e-21
Identities = 49/74 (66%), Positives = 59/74 (79%), Gaps = 3/74 (4%)
Frame = -3
Query: 646 SCKWSTGAGPRIGCVRDYPEHSQSRAMEQVNLSPR---PTSALLNKRCPIPSPRPSPKVR 476
SCKW++G GPRIGCVRDYP QS+A EQV+LSPR ++ + PIPSPRPSP+VR
Sbjct: 454 SCKWNSGVGPRIGCVRDYPMELQSQAFEQVSLSPRISPGSTRFPSPYGPIPSPRPSPRVR 513
Query: 475 MSPRLAYMGLPSPR 434
+SPRLAYMG+PSPR
Sbjct: 514 VSPRLAYMGIPSPR 527
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 573,600,293
Number of Sequences: 1393205
Number of extensions: 13074768
Number of successful extensions: 45333
Number of sequences better than 10.0: 78
Number of HSP's better than 10.0 without gapping: 36482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42126
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
