Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003803A_C01 KMC003803A_c01
(523 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568751.1| polyadenylate-binding protein II (PAB2), putati... 54 8e-10
gb|AAM61036.1| contains similarity to poly(A)-binding protein II... 54 8e-10
ref|NP_196597.1| polyadenylate-binding protein II (PAB2), putati... 45 2e-07
ref|NP_201329.1| polyadenylate-binding protein II (PAB2), putati... 42 1e-06
gb|EAA14547.1| agCP8538 [Anopheles gambiae str. PEST] 36 0.24
>ref|NP_568751.1| polyadenylate-binding protein II (PAB2), putative; protein id:
At5g51120.1, supported by cDNA: 10876., supported by
cDNA: gi_15809837, supported by cDNA: gi_15982732,
supported by cDNA: gi_19310784 [Arabidopsis thaliana]
gi|15809838|gb|AAL06847.1| AT5g51120/MWD22_6
[Arabidopsis thaliana] gi|15982733|gb|AAL09819.1|
unknown protein [Arabidopsis thaliana]
gi|19310785|gb|AAL85123.1| unknown protein [Arabidopsis
thaliana] gi|21358850|gb|AAM47151.1| unknown protein
[Arabidopsis thaliana]
Length = 227
Score = 54.3 bits (129), Expect(2) = 8e-10
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = -3
Query: 437 PFYPPYAYGRSPRYRRPMRYRPY 369
PFYPPYAYGR PR+RRPMRYRPY
Sbjct: 205 PFYPPYAYGRVPRFRRPMRYRPY 227
Score = 30.0 bits (66), Expect(2) = 8e-10
Identities = 15/26 (57%), Positives = 17/26 (64%)
Frame = -2
Query: 522 RTNVPGMNPYFGRSQAGFRSRRPFMP 445
RTNVPGM + GR + FR R FMP
Sbjct: 178 RTNVPGMRQFRGRGRP-FRPMRGFMP 202
>gb|AAM61036.1| contains similarity to poly(A)-binding protein II [Arabidopsis
thaliana]
Length = 227
Score = 54.3 bits (129), Expect(2) = 8e-10
Identities = 21/23 (91%), Positives = 22/23 (95%)
Frame = -3
Query: 437 PFYPPYAYGRSPRYRRPMRYRPY 369
PFYPPYAYGR PR+RRPMRYRPY
Sbjct: 205 PFYPPYAYGRVPRFRRPMRYRPY 227
Score = 30.0 bits (66), Expect(2) = 8e-10
Identities = 15/26 (57%), Positives = 17/26 (64%)
Frame = -2
Query: 522 RTNVPGMNPYFGRSQAGFRSRRPFMP 445
RTNVPGM + GR + FR R FMP
Sbjct: 178 RTNVPGMRQFRGRGRP-FRPMRGFMP 202
>ref|NP_196597.1| polyadenylate-binding protein II (PAB2), putative; protein id:
At5g10350.1 [Arabidopsis thaliana]
gi|11358793|pir||T50004 RNA binding protein-like -
Arabidopsis thaliana gi|7671468|emb|CAB89408.1| RNA
binding protein-like [Arabidopsis thaliana]
gi|28393013|gb|AAO41941.1| putative
polyadenylate-binding protein II (PAB2) [Arabidopsis
thaliana] gi|28827384|gb|AAO50536.1| putative
polyadenylate-binding protein II (PAB2) [Arabidopsis
thaliana]
Length = 217
Score = 44.7 bits (104), Expect(2) = 2e-07
Identities = 16/22 (72%), Positives = 19/22 (85%)
Frame = -3
Query: 434 FYPPYAYGRSPRYRRPMRYRPY 369
FY PY YG++PR+RRPMRY PY
Sbjct: 195 FYSPYGYGKAPRFRRPMRYMPY 216
Score = 31.6 bits (70), Expect(2) = 2e-07
Identities = 17/29 (58%), Positives = 19/29 (64%), Gaps = 3/29 (10%)
Frame = -2
Query: 522 RTNVPGMNPYF-GR--SQAGFRSRRPFMP 445
RTNVPGM Y GR G+R RRPF+P
Sbjct: 164 RTNVPGMKQYHPGRFNPSMGYRFRRPFVP 192
>ref|NP_201329.1| polyadenylate-binding protein II (PAB2), putative; protein id:
At5g65260.1, supported by cDNA: gi_14423493 [Arabidopsis
thaliana] gi|10178188|dbj|BAB11662.1| poly(A)-binding
protein II-like [Arabidopsis thaliana]
gi|14423494|gb|AAK62429.1|AF386984_1 poly(A)-binding
protein II-like [Arabidopsis thaliana]
gi|23197620|gb|AAN15337.1| poly(A)-binding protein
II-like [Arabidopsis thaliana]
Length = 220
Score = 42.4 bits (98), Expect(2) = 1e-06
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = -3
Query: 431 YPPYAYGRSPRYRRPMRYRPY 369
Y PY YG++PR+RRPMRY PY
Sbjct: 199 YSPYGYGKAPRFRRPMRYMPY 219
Score = 30.8 bits (68), Expect(2) = 1e-06
Identities = 15/28 (53%), Positives = 18/28 (63%), Gaps = 3/28 (10%)
Frame = -2
Query: 522 RTNVPGMNPYFGR---SQAGFRSRRPFM 448
RTNVPG+ + GR G+R RRPFM
Sbjct: 167 RTNVPGLKQFRGRRFNPYMGYRFRRPFM 194
>gb|EAA14547.1| agCP8538 [Anopheles gambiae str. PEST]
Length = 611
Score = 36.2 bits (82), Expect = 0.24
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = -1
Query: 325 FTIRRGQGVINLPCNNIRWWRKNLKLCLHSQLD 227
F +RRG+GV ++ +RW R +L LC+H D
Sbjct: 45 FVVRRGRGVFSVKMKAVRWVRVSLALCIHIAYD 77
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,718,137
Number of Sequences: 1393205
Number of extensions: 9769550
Number of successful extensions: 21883
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 20738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21873
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
