Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003802A_C01 KMC003802A_c01
(452 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43556.1| unknown protein [Arabidopsis thaliana] 100 5e-21
pir||T00623 hypothetical protein T27I1.6 - Arabidopsis thaliana ... 84 7e-16
ref|NP_172475.1| unknown protein; protein id: At1g10040.1 [Arabi... 84 7e-16
ref|NP_568754.1| putative protein; protein id: At5g51180.1, supp... 83 1e-15
dbj|BAA97380.1| gene_id:MWD22.12~pir||T00623~similar to unknown ... 80 1e-14
>dbj|BAC43556.1| unknown protein [Arabidopsis thaliana]
Length = 418
Score = 100 bits (250), Expect = 5e-21
Identities = 45/62 (72%), Positives = 54/62 (86%)
Frame = -2
Query: 403 QTIDLEEEMIRGLTQVPWERVDVSFHKSTQRYIAHSTIQVKSYWMNSDGADVVYHMIDNF 224
Q DLEEEMI GL+Q+ WERVDVSFH S QRY+AHSTIQVK+YW++SDG DVV+HM+D+F
Sbjct: 357 QGTDLEEEMIHGLSQLSWERVDVSFHNSKQRYVAHSTIQVKTYWLHSDGKDVVFHMMDHF 416
Query: 223 HL 218
L
Sbjct: 417 GL 418
>pir||T00623 hypothetical protein T27I1.6 - Arabidopsis thaliana
gi|3540182|gb|AAC34332.1| Unknown protein [Arabidopsis
thaliana]
Length = 402
Score = 84.0 bits (206), Expect = 7e-16
Identities = 38/60 (63%), Positives = 50/60 (83%)
Frame = -2
Query: 403 QTIDLEEEMIRGLTQVPWERVDVSFHKSTQRYIAHSTIQVKSYWMNSDGADVVYHMIDNF 224
+ +D+EEEMIR LT++ WERVDVSF + QR++AH+TIQVK+ +NS GADV+ HMIDNF
Sbjct: 341 KNLDMEEEMIRELTKLSWERVDVSFRGTLQRFLAHNTIQVKTKMINSAGADVIQHMIDNF 400
>ref|NP_172475.1| unknown protein; protein id: At1g10040.1 [Arabidopsis thaliana]
Length = 379
Score = 84.0 bits (206), Expect = 7e-16
Identities = 38/60 (63%), Positives = 50/60 (83%)
Frame = -2
Query: 403 QTIDLEEEMIRGLTQVPWERVDVSFHKSTQRYIAHSTIQVKSYWMNSDGADVVYHMIDNF 224
+ +D+EEEMIR LT++ WERVDVSF + QR++AH+TIQVK+ +NS GADV+ HMIDNF
Sbjct: 318 KNLDMEEEMIRELTKLSWERVDVSFRGTLQRFLAHNTIQVKTKMINSAGADVIQHMIDNF 377
>ref|NP_568754.1| putative protein; protein id: At5g51180.1, supported by cDNA:
gi_15292882, supported by cDNA: gi_20258912 [Arabidopsis
thaliana] gi|15292883|gb|AAK92812.1| unknown protein
[Arabidopsis thaliana] gi|20258913|gb|AAM14150.1|
unknown protein [Arabidopsis thaliana]
Length = 357
Score = 82.8 bits (203), Expect = 1e-15
Identities = 37/58 (63%), Positives = 48/58 (81%)
Frame = -2
Query: 394 DLEEEMIRGLTQVPWERVDVSFHKSTQRYIAHSTIQVKSYWMNSDGADVVYHMIDNFH 221
D+EEEMI+GL+ V WE+VDVSFH S QR+ AHS IQVK+ M+ +GADV+ H+ID+FH
Sbjct: 299 DIEEEMIKGLSSVSWEKVDVSFHSSRQRFAAHSVIQVKNEDMHIEGADVIEHIIDHFH 356
>dbj|BAA97380.1| gene_id:MWD22.12~pir||T00623~similar to unknown protein
[Arabidopsis thaliana]
Length = 360
Score = 79.7 bits (195), Expect = 1e-14
Identities = 41/78 (52%), Positives = 54/78 (68%), Gaps = 1/78 (1%)
Frame = -2
Query: 451 GEN-DDDIGNKASIYGGQTIDLEEEMIRGLTQVPWERVDVSFHKSTQRYIAHSTIQVKSY 275
GEN DDI + ++ EEMI+GL+ V WE+VDVSFH S QR+ AHS IQVK+
Sbjct: 291 GENHSDDI---------EVVNCAEEMIKGLSSVSWEKVDVSFHSSRQRFAAHSVIQVKNE 341
Query: 274 WMNSDGADVVYHMIDNFH 221
M+ +GADV+ H+ID+FH
Sbjct: 342 DMHIEGADVIEHIIDHFH 359
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 365,861,389
Number of Sequences: 1393205
Number of extensions: 7210944
Number of successful extensions: 15324
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 15100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15323
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
