Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003799A_C01 KMC003799A_c01
(468 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_044738.1| Pol [Rauscher murine leukemia virus] gi|2228759... 33 1.1
gb|AAO61197.1|AF411814_3 Gag-Pro-Pol polyprotein [amphotropic mu... 33 1.9
gb|AAC58562.1| integrase [Murine leukemia virus] 32 3.3
gb|AAB64160.1| Pol [synthetic construct] 32 3.3
emb|CAA55543.1| reverse transcriptase [Murine leukemia virus] 32 3.3
>ref|NP_044738.1| Pol [Rauscher murine leukemia virus] gi|2228759|gb|AAB86912.1| Pol
[Rauscher murine leukemia virus]
Length = 1204
Score = 33.5 bits (75), Expect = 1.1
Identities = 23/70 (32%), Positives = 32/70 (44%)
Frame = +2
Query: 125 PYTLEHFHHPILHHDHIGKKEKEPRTVKSTWHVY*SKPLLLHSLFFIKLKELHCTTLIP* 304
PYT EHFH+ + + + K + K W VY KP++ F L LH T +
Sbjct: 802 PYTREHFHYTVTDIEDLTKLGATYDSAKKCW-VYQGKPVMPDQFTFELLDFLHQLTHLSF 860
Query: 305 HKHIAQLYKS 334
K A L +S
Sbjct: 861 SKTKALLERS 870
>gb|AAO61197.1|AF411814_3 Gag-Pro-Pol polyprotein [amphotropic murine leukemia virus]
Length = 1736
Score = 32.7 bits (73), Expect = 1.9
Identities = 23/70 (32%), Positives = 31/70 (43%)
Frame = +2
Query: 125 PYTLEHFHHPILHHDHIGKKEKEPRTVKSTWHVY*SKPLLLHSLFFIKLKELHCTTLIP* 304
PYT EHFH+ + + K + K W VY KP++ F L LH T +
Sbjct: 1334 PYTHEHFHYTVTDIKDLTKLGATYDSTKKYW-VYQGKPVMPDQFTFELLDSLHQMTHLSF 1392
Query: 305 HKHIAQLYKS 334
K A L +S
Sbjct: 1393 SKTKALLERS 1402
>gb|AAC58562.1| integrase [Murine leukemia virus]
Length = 408
Score = 32.0 bits (71), Expect = 3.3
Identities = 23/70 (32%), Positives = 31/70 (43%)
Frame = +2
Query: 125 PYTLEHFHHPILHHDHIGKKEKEPRTVKSTWHVY*SKPLLLHSLFFIKLKELHCTTLIP* 304
PYT EHFH+ + + K + K W VY KP++ F L LH T +
Sbjct: 6 PYTHEHFHYTVTDTKDLTKLGATYDSAKKYW-VYQGKPVMPDQFTFELLDFLHQLTHLSF 64
Query: 305 HKHIAQLYKS 334
K A L +S
Sbjct: 65 SKTKALLERS 74
>gb|AAB64160.1| Pol [synthetic construct]
Length = 1199
Score = 32.0 bits (71), Expect = 3.3
Identities = 23/70 (32%), Positives = 31/70 (43%)
Frame = +2
Query: 125 PYTLEHFHHPILHHDHIGKKEKEPRTVKSTWHVY*SKPLLLHSLFFIKLKELHCTTLIP* 304
PYT EHFH+ + + K + K W VY KP++ F L LH T +
Sbjct: 797 PYTHEHFHYTVTDTKDLTKLGATYDSAKKYW-VYQGKPVMPDQFTFELLDFLHQLTHLSF 855
Query: 305 HKHIAQLYKS 334
K A L +S
Sbjct: 856 SKTKALLERS 865
>emb|CAA55543.1| reverse transcriptase [Murine leukemia virus]
Length = 397
Score = 32.0 bits (71), Expect = 3.3
Identities = 23/70 (32%), Positives = 31/70 (43%)
Frame = +2
Query: 125 PYTLEHFHHPILHHDHIGKKEKEPRTVKSTWHVY*SKPLLLHSLFFIKLKELHCTTLIP* 304
PYT EHFH+ + + K + K W VY KP++ F L LH T +
Sbjct: 307 PYTHEHFHYTVTDTKDLTKLGATYDSAKKYW-VYQGKPVMPDQFTFELLDFLHQLTHLSF 365
Query: 305 HKHIAQLYKS 334
K A L +S
Sbjct: 366 SKTKALLERS 375
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,230,629
Number of Sequences: 1393205
Number of extensions: 8924951
Number of successful extensions: 16100
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 15282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16079
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
