Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003794A_C01 KMC003794A_c01
(337 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG29593.1|AF196286_1 Ser/Thr specific protein phosphatase 2A... 32 2.1
ref|NP_214197.1| UDP-MurNac-tripeptide synthetase [Aquifex aeoli... 32 2.1
gb|EAA42179.1| GLP_480_88195_92982 [Giardia lamblia ATCC 50803] 31 3.6
>gb|AAG29593.1|AF196286_1 Ser/Thr specific protein phosphatase 2A A regulatory subunit alpha
isoform [Medicago sativa subsp. x varia]
Length = 585
Score = 32.0 bits (71), Expect = 2.1
Identities = 14/17 (82%), Positives = 16/17 (93%)
Frame = -1
Query: 337 FFANKALTAIDHVMMSS 287
FF+N+AL AIDHVMMSS
Sbjct: 569 FFSNQALQAIDHVMMSS 585
>ref|NP_214197.1| UDP-MurNac-tripeptide synthetase [Aquifex aeolicus]
gi|8134574|sp|O67631|MURE_AQUAE
UDP-N-acetylmuramoylalanyl-D-glutamate--2,
6-diaminopimelate ligase (UDP-N-acetylmuramyl-tripeptide
synthetase) (Meso-diaminopimelate-adding enzyme)
(UDP-MurNAc-tripeptide synthetase)
gi|7451747|pir||E70450 UDP-MurNac-tripeptide synthetase
- Aquifex aeolicus gi|2984050|gb|AAC07591.1|
UDP-MurNac-tripeptide synthetase [Aquifex aeolicus VF5]
Length = 482
Score = 32.0 bits (71), Expect = 2.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +2
Query: 14 TYKILITSKTRQF*QSPVSYETKIKILARQDNFGKLLLVYIHWDKITHNRQ 166
T + SK + F YE+K+KI+ D +GK LL H + IT+ ++
Sbjct: 209 TMEDYFASKAKLF----TEYESKVKIINADDTYGKRLLKITHGEIITYGKK 255
>gb|EAA42179.1| GLP_480_88195_92982 [Giardia lamblia ATCC 50803]
Length = 1595
Score = 31.2 bits (69), Expect = 3.6
Identities = 25/108 (23%), Positives = 50/108 (46%), Gaps = 2/108 (1%)
Frame = +2
Query: 11 PTYKILITSKTRQF*QSPVSYETKIKILARQDNFGKLLLVYIHWDKITHNRQ*LIMSLTI 190
P + + T K S +S ET + + R +N G L +Y RQ +++ + I
Sbjct: 1482 PIQRFMYTLKCLNIDSSRISSETTLFSVLRNNNSGFYLGIYA--------RQYIVLRIEI 1533
Query: 191 AEKRQVKYKYSEIYYHFLQKSST*KRVQDCCLARHHDMINGR--ESFI 328
++ +++ ++Y +FL+ D L H D+++ R +SF+
Sbjct: 1534 SDVYKIERNLCQVYLYFLRAFVA---TGDNLLFAHLDLLDDRTAQSFV 1578
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 231,148,709
Number of Sequences: 1393205
Number of extensions: 3774599
Number of successful extensions: 4579
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4579
length of database: 448,689,247
effective HSP length: 87
effective length of database: 327,480,412
effective search space used: 7859529888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
