Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003790A_C01 KMC003790A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197240.1| 2-hydroxyphytanoyl-CoA lyase-like protein; prot... 160 8e-39
emb|CAC19854.1| Oxalyl-CoA decarboxylase [Arabidopsis thaliana] 160 8e-39
dbj|BAB33274.1| putative oxalyl-CoA decarboxylase [Oryza sativa ... 157 1e-37
ref|NP_769797.1| oxalyl-CoA decarboxylase [Bradyrhizobium japoni... 79 5e-14
ref|ZP_00028242.1| hypothetical protein [Burkholderia fungorum] 76 3e-13
>ref|NP_197240.1| 2-hydroxyphytanoyl-CoA lyase-like protein; protein id: At5g17380.1,
supported by cDNA: gi_20466615 [Arabidopsis thaliana]
gi|11279914|pir||T51575 2-hydroxyphytanoyl-CoA
lyase-like protein - Arabidopsis thaliana
gi|9755761|emb|CAC01733.1| 2-hydroxyphytanoyl-CoA
lyase-like protein [Arabidopsis thaliana]
gi|20466616|gb|AAM20625.1| 2-hydroxyphytanoyl-CoA
lyase-like protein [Arabidopsis thaliana]
gi|23198152|gb|AAN15603.1| 2-hydroxyphytanoyl-CoA
lyase-like protein [Arabidopsis thaliana]
Length = 572
Score = 160 bits (406), Expect = 8e-39
Identities = 74/85 (87%), Positives = 82/85 (96%)
Frame = -3
Query: 560 YGGDRRTPEEINGPHKDDPAPTSFVPNAGYHALIEAFGGKGYLVGTPDELKSALSESFSA 381
YGGDRR PEEI+GPHK+DPAPTSFVPNAGYH LIEAFGGKGY+V TPDELKSAL+ESF+A
Sbjct: 488 YGGDRRGPEEISGPHKEDPAPTSFVPNAGYHKLIEAFGGKGYIVETPDELKSALAESFAA 547
Query: 380 RKPAVINVIIDPYAGSESGRLQHKN 306
RKPAV+NVIIDP+AG+ESGRLQHKN
Sbjct: 548 RKPAVVNVIIDPFAGAESGRLQHKN 572
>emb|CAC19854.1| Oxalyl-CoA decarboxylase [Arabidopsis thaliana]
Length = 572
Score = 160 bits (406), Expect = 8e-39
Identities = 74/85 (87%), Positives = 82/85 (96%)
Frame = -3
Query: 560 YGGDRRTPEEINGPHKDDPAPTSFVPNAGYHALIEAFGGKGYLVGTPDELKSALSESFSA 381
YGGDRR PEEI+GPHK+DPAPTSFVPNAGYH LIEAFGGKGY+V TPDELKSAL+ESF+A
Sbjct: 488 YGGDRRGPEEISGPHKEDPAPTSFVPNAGYHKLIEAFGGKGYIVETPDELKSALAESFAA 547
Query: 380 RKPAVINVIIDPYAGSESGRLQHKN 306
RKPAV+NVIIDP+AG+ESGRLQHKN
Sbjct: 548 RKPAVVNVIIDPFAGAESGRLQHKN 572
>dbj|BAB33274.1| putative oxalyl-CoA decarboxylase [Oryza sativa (japonica
cultivar-group)]
Length = 577
Score = 157 bits (396), Expect = 1e-37
Identities = 73/85 (85%), Positives = 80/85 (93%)
Frame = -3
Query: 560 YGGDRRTPEEINGPHKDDPAPTSFVPNAGYHALIEAFGGKGYLVGTPDELKSALSESFSA 381
YGGDRR+P+EI GP+KDDPAPTSFVP AGYH ++EAFGGKGYLV TPDELKSALSESF A
Sbjct: 493 YGGDRRSPDEITGPYKDDPAPTSFVPAAGYHKMMEAFGGKGYLVETPDELKSALSESFRA 552
Query: 380 RKPAVINVIIDPYAGSESGRLQHKN 306
RKPAVINVIIDPYAG+ESGR+QHKN
Sbjct: 553 RKPAVINVIIDPYAGAESGRMQHKN 577
>ref|NP_769797.1| oxalyl-CoA decarboxylase [Bradyrhizobium japonicum]
gi|27351415|dbj|BAC48422.1| oxalyl-CoA decarboxylase
[Bradyrhizobium japonicum USDA 110]
Length = 577
Score = 78.6 bits (192), Expect = 5e-14
Identities = 38/76 (50%), Positives = 54/76 (71%)
Frame = -3
Query: 509 DPAPTSFVPNAGYHALIEAFGGKGYLVGTPDELKSALSESFSARKPAVINVIIDPYAGSE 330
DPA T FV A Y ++EAFGG G +PDELK A++E+ ++RKP +IN +IDP AGSE
Sbjct: 501 DPATTVFVKGARYDKMMEAFGGVGVNATSPDELKRAVNEAMASRKPTLINAVIDPAAGSE 560
Query: 329 SGRLQHKN*FTLIAKR 282
SGR+ + N +++ K+
Sbjct: 561 SGRIGNLNPQSVLQKK 576
>ref|ZP_00028242.1| hypothetical protein [Burkholderia fungorum]
Length = 290
Score = 75.9 bits (185), Expect = 3e-13
Identities = 38/76 (50%), Positives = 50/76 (65%)
Frame = -3
Query: 533 EINGPHKDDPAPTSFVPNAGYHALIEAFGGKGYLVGTPDELKSALSESFSARKPAVINVI 354
++N D APT FV A Y +IEAFGG GY TP+EL AL E+ ++ KP++IN +
Sbjct: 207 DVNPTGGKDVAPTVFVKGARYDRMIEAFGGIGYHASTPEELTKALREAIASGKPSLINAV 266
Query: 353 IDPYAGSESGRLQHKN 306
ID AG+ESGRL + N
Sbjct: 267 IDEAAGTESGRLTNLN 282
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,250,027
Number of Sequences: 1393205
Number of extensions: 10906962
Number of successful extensions: 25035
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 24273
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25024
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
