Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003789A_C01 KMC003789A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566742.1| PHD-finger protein, putative; protein id: At3g2... 129 1e-29
gb|AAO42002.1| putative PHD-finger protein [Arabidopsis thaliana] 129 1e-29
gb|AAO72583.1| putative PHD-finger protein [Oryza sativa (japoni... 120 1e-26
dbj|BAC27489.1| unnamed protein product [Mus musculus] 110 1e-23
ref|NP_579923.1| ING1-like protein; DNA segment, Chr 6, Wayne St... 109 2e-23
>ref|NP_566742.1| PHD-finger protein, putative; protein id: At3g24010.1, supported by
cDNA: 95660. [Arabidopsis thaliana]
gi|9294670|dbj|BAB03019.1| gene_id:F14O13.20~unknown
protein [Arabidopsis thaliana]
gi|21618065|gb|AAM67115.1| PHD-finger protein, putative
[Arabidopsis thaliana]
Length = 234
Score = 129 bits (325), Expect = 1e-29
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = -2
Query: 498 AAATATDAQPTSVNPTGMDLDLPVDPNAPTYCFCNQVSYGEMVACDNPDCKIEWFHFGCV 319
A A +T A T + + MDLDLPVDPN PTYC CNQVS+GEMVACDN CKIEWFHFGCV
Sbjct: 150 ATAASTAAASTGMTSSNMDLDLPVDPNEPTYCICNQVSFGEMVACDNNACKIEWFHFGCV 209
Query: 318 GLREQPQGKWYCSQLCSYKK 259
GL+EQP+GKWYC + + KK
Sbjct: 210 GLKEQPKGKWYCPECATVKK 229
>gb|AAO42002.1| putative PHD-finger protein [Arabidopsis thaliana]
Length = 160
Score = 129 bits (325), Expect = 1e-29
Identities = 55/80 (68%), Positives = 63/80 (78%)
Frame = -2
Query: 498 AAATATDAQPTSVNPTGMDLDLPVDPNAPTYCFCNQVSYGEMVACDNPDCKIEWFHFGCV 319
A A +T A T + + MDLDLPVDPN PTYC CNQVS+GEMVACDN CKIEWFHFGCV
Sbjct: 76 ATAASTAAASTGMTSSNMDLDLPVDPNEPTYCICNQVSFGEMVACDNNACKIEWFHFGCV 135
Query: 318 GLREQPQGKWYCSQLCSYKK 259
GL+EQP+GKWYC + + KK
Sbjct: 136 GLKEQPKGKWYCPECATVKK 155
>gb|AAO72583.1| putative PHD-finger protein [Oryza sativa (japonica
cultivar-group)] gi|29367607|gb|AAO72665.1| putative
PHD-finger protein [Oryza sativa (japonica
cultivar-group)]
Length = 253
Score = 120 bits (300), Expect = 1e-26
Identities = 48/71 (67%), Positives = 56/71 (78%)
Frame = -2
Query: 471 PTSVNPTGMDLDLPVDPNAPTYCFCNQVSYGEMVACDNPDCKIEWFHFGCVGLREQPQGK 292
PT +DL+LPVDPN PTYC CNQVSYGEMVACDN DCKIEW+HFGCVG++E P+GK
Sbjct: 178 PTEQPAPAIDLELPVDPNEPTYCLCNQVSYGEMVACDNNDCKIEWYHFGCVGVKEHPKGK 237
Query: 291 WYCSQLCSYKK 259
WYC ++K
Sbjct: 238 WYCPSCIGFQK 248
>dbj|BAC27489.1| unnamed protein product [Mus musculus]
Length = 249
Score = 110 bits (274), Expect = 1e-23
Identities = 45/70 (64%), Positives = 58/70 (82%)
Frame = -2
Query: 468 TSVNPTGMDLDLPVDPNAPTYCFCNQVSYGEMVACDNPDCKIEWFHFGCVGLREQPQGKW 289
+SV+P+ + LD+PVDPN PTYC C+QVSYGEM+ CDNPDC IEWFHF CVGL +P+GKW
Sbjct: 179 SSVHPSDV-LDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKW 237
Query: 288 YCSQLCSYKK 259
+C + CS ++
Sbjct: 238 FCPR-CSQER 246
>ref|NP_579923.1| ING1-like protein; DNA segment, Chr 6, Wayne State University 147,
expressed [Mus musculus] gi|12843961|dbj|BAB26183.1|
unnamed protein product [Mus musculus]
gi|14318655|gb|AAH09127.1| Unknown (protein for
MGC:12080) [Mus musculus] gi|26341284|dbj|BAC34304.1|
unnamed protein product [Mus musculus]
Length = 248
Score = 109 bits (273), Expect = 2e-23
Identities = 45/69 (65%), Positives = 57/69 (82%)
Frame = -2
Query: 465 SVNPTGMDLDLPVDPNAPTYCFCNQVSYGEMVACDNPDCKIEWFHFGCVGLREQPQGKWY 286
SV+P+ + LD+PVDPN PTYC C+QVSYGEM+ CDNPDC IEWFHF CVGL +P+GKW+
Sbjct: 179 SVHPSDV-LDMPVDPNEPTYCLCHQVSYGEMIGCDNPDCSIEWFHFACVGLTTKPRGKWF 237
Query: 285 CSQLCSYKK 259
C + CS ++
Sbjct: 238 CPR-CSQER 245
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 424,556,425
Number of Sequences: 1393205
Number of extensions: 8681133
Number of successful extensions: 22543
Number of sequences better than 10.0: 211
Number of HSP's better than 10.0 without gapping: 21233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22406
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
