Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003784A_C01 KMC003784A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM19353.1|AF369886_1 TIR-similar-domain-containing protein T... 74 1e-12
gb|AAO23066.1| R 3 protein [Glycine max] 62 5e-09
gb|AAF61210.1| unknown [Glycine max] 61 8e-09
gb|AAO23069.1| R 4 protein [Glycine max] 59 5e-08
gb|AAO23076.1| R 1 protein [Glycine max] 58 7e-08
>gb|AAM19353.1|AF369886_1 TIR-similar-domain-containing protein TSDC [Pisum sativum]
Length = 464
Score = 73.9 bits (180), Expect = 1e-12
Identities = 41/100 (41%), Positives = 59/100 (59%)
Frame = -3
Query: 547 QKRKNQLVLPVFYGVEPTDIRNLKGKFGEAMAEIENKFGKDSNTIHEWKQALRDISYLKG 368
+K K QLV P+FY VEP+DIRN++ +G+ MA EN FG DS + +WK AL G
Sbjct: 374 KKLKKQLVWPIFYKVEPSDIRNMRKCYGKDMARHENIFGVDSERVQKWKSAL-------G 426
Query: 367 EPCHVSNLNGEQDIRIRDQLIEKIVRFARDQRHRLHIQSM 248
E C++S + I + +KIV A D R RL ++++
Sbjct: 427 EVCNLSGM--AYSIGFEYEFFQKIVEHANDIRSRLQLRTI 464
>gb|AAO23066.1| R 3 protein [Glycine max]
Length = 897
Score = 62.0 bits (149), Expect = 5e-09
Identities = 26/59 (44%), Positives = 39/59 (66%)
Frame = -3
Query: 544 KRKNQLVLPVFYGVEPTDIRNLKGKFGEAMAEIENKFGKDSNTIHEWKQALRDISYLKG 368
KRK LV+PVFY V+P+D+R KG +GEAMA+ + +F + +W+ AL ++ L G
Sbjct: 94 KRKGLLVIPVFYNVDPSDVRQQKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADLSG 152
>gb|AAF61210.1| unknown [Glycine max]
Length = 148
Score = 61.2 bits (147), Expect = 8e-09
Identities = 25/52 (48%), Positives = 38/52 (73%)
Frame = -3
Query: 544 KRKNQLVLPVFYGVEPTDIRNLKGKFGEAMAEIENKFGKDSNTIHEWKQALR 389
+RK LV+PVFY V+P+D+R+ KG +GEA+A++E +F D + WK AL+
Sbjct: 97 QRKRLLVIPVFYKVDPSDVRHQKGSYGEALAKLERRFQHDPEKLQNWKMALQ 148
>gb|AAO23069.1| R 4 protein [Glycine max]
Length = 895
Score = 58.5 bits (140), Expect = 5e-08
Identities = 24/59 (40%), Positives = 40/59 (67%)
Frame = -3
Query: 544 KRKNQLVLPVFYGVEPTDIRNLKGKFGEAMAEIENKFGKDSNTIHEWKQALRDISYLKG 368
K + LV+PVFY V+P+D+R+ KG +GEAMA+ + +F + +W+ AL+ ++ L G
Sbjct: 94 KSEGLLVIPVFYKVDPSDVRHQKGSYGEAMAKHQKRFKAKKEKLQKWRMALKQVADLSG 152
>gb|AAO23076.1| R 1 protein [Glycine max]
Length = 902
Score = 58.2 bits (139), Expect = 7e-08
Identities = 24/59 (40%), Positives = 40/59 (67%)
Frame = -3
Query: 544 KRKNQLVLPVFYGVEPTDIRNLKGKFGEAMAEIENKFGKDSNTIHEWKQALRDISYLKG 368
KR+ LV+PVF+ V+P+ +R+LKG +GEAMA+ + +F + +W+ AL ++ L G
Sbjct: 94 KREGLLVIPVFHNVDPSAVRHLKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADLSG 152
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,973,556
Number of Sequences: 1393205
Number of extensions: 9758109
Number of successful extensions: 28434
Number of sequences better than 10.0: 292
Number of HSP's better than 10.0 without gapping: 27542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28369
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
