Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003783A_C01 KMC003783A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA56991.1| formerly called HAT24; synaptobrevin-related protein 129 3e-29
ref|NP_180871.1| putative synaptobrevin; protein id: At2g33120.1... 129 3e-29
ref|NP_180826.1| putative synaptobrevin; protein id: At2g32670.1... 126 2e-28
dbj|BAC42934.1| putative synaptobrevin [Arabidopsis thaliana] 126 2e-28
gb|AAO72389.1| synaptobrevin-like protein [Oryza sativa (japonic... 122 4e-27
>gb|AAA56991.1| formerly called HAT24; synaptobrevin-related protein
Length = 221
Score = 129 bits (323), Expect = 3e-29
Identities = 63/77 (81%), Positives = 68/77 (87%)
Frame = -2
Query: 567 MMENIEKVLDRGEKIELLVDKTDTLRSQAQDFRQQGTQIRRKMWFPNMKIKLIVAGIIVL 388
MMENIEKVLDRGEKIELLVDKT+ LRSQAQDFR QGTQ+RRKMWF NMKIKLIV II+
Sbjct: 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIA 204
Query: 387 LILILIISICGSLNCSK 337
LILI+I+SICG NC K
Sbjct: 205 LILIIILSICGGFNCGK 221
>ref|NP_180871.1| putative synaptobrevin; protein id: At2g33120.1, supported by cDNA:
2443., supported by cDNA: gi_16930420, supported by
cDNA: gi_18252974, supported by cDNA: gi_18958027,
supported by cDNA: gi_600709 [Arabidopsis thaliana]
gi|21542460|sp|P47192|V722_ARATH Vesicle-associated
membrane protein 722 (AtVAMP722) (Synaptobrevin-related
protein 1) gi|25408247|pir||F84741 probable
synaptobrevin [imported] - Arabidopsis thaliana
gi|2924792|gb|AAC04921.1| putative synaptobrevin
[Arabidopsis thaliana]
gi|16930421|gb|AAL31896.1|AF419564_1 At2g33120/F25I18.14
[Arabidopsis thaliana] gi|18252975|gb|AAL62414.1|
putative synaptobrevin [Arabidopsis thaliana]
gi|18958028|gb|AAL79587.1| At2g33120/F25I18.14
[Arabidopsis thaliana] gi|21389653|gb|AAM48025.1|
putative synaptobrevin [Arabidopsis thaliana]
gi|21592481|gb|AAM64431.1| putative synaptobrevin
[Arabidopsis thaliana] gi|22135820|gb|AAM91096.1|
At2g33120/F25I18.14 [Arabidopsis thaliana]
Length = 221
Score = 129 bits (323), Expect = 3e-29
Identities = 63/77 (81%), Positives = 68/77 (87%)
Frame = -2
Query: 567 MMENIEKVLDRGEKIELLVDKTDTLRSQAQDFRQQGTQIRRKMWFPNMKIKLIVAGIIVL 388
MMENIEKVLDRGEKIELLVDKT+ LRSQAQDFR QGTQ+RRKMWF NMKIKLIV II+
Sbjct: 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTQMRRKMWFQNMKIKLIVLAIIIA 204
Query: 387 LILILIISICGSLNCSK 337
LILI+I+SICG NC K
Sbjct: 205 LILIIILSICGGFNCGK 221
>ref|NP_180826.1| putative synaptobrevin; protein id: At2g32670.1 [Arabidopsis
thaliana] gi|27805753|sp|O48850|V725_ARATH
Vesicle-associated membrane protein 725 (AtVAMP725)
gi|7485009|pir||T00801 probable synaptobrevin [imported]
- Arabidopsis thaliana gi|2914706|gb|AAC04496.1|
putative synaptobrevin [Arabidopsis thaliana]
Length = 220
Score = 126 bits (317), Expect = 2e-28
Identities = 61/76 (80%), Positives = 68/76 (89%)
Frame = -2
Query: 567 MMENIEKVLDRGEKIELLVDKTDTLRSQAQDFRQQGTQIRRKMWFPNMKIKLIVAGIIVL 388
MMENIEKVLDRGEKIELLVDKT+ LRSQAQDFR QGT+IRRKMWF NMKIKLIV GII+
Sbjct: 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIIT 204
Query: 387 LILILIISICGSLNCS 340
LILI+I+S+CG C+
Sbjct: 205 LILIIILSVCGGFKCT 220
>dbj|BAC42934.1| putative synaptobrevin [Arabidopsis thaliana]
Length = 285
Score = 126 bits (317), Expect = 2e-28
Identities = 61/76 (80%), Positives = 68/76 (89%)
Frame = -2
Query: 567 MMENIEKVLDRGEKIELLVDKTDTLRSQAQDFRQQGTQIRRKMWFPNMKIKLIVAGIIVL 388
MMENIEKVLDRGEKIELLVDKT+ LRSQAQDFR QGT+IRRKMWF NMKIKLIV GII+
Sbjct: 210 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRTQGTKIRRKMWFENMKIKLIVLGIIIT 269
Query: 387 LILILIISICGSLNCS 340
LILI+I+S+CG C+
Sbjct: 270 LILIIILSVCGGFKCT 285
>gb|AAO72389.1| synaptobrevin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 220
Score = 122 bits (305), Expect = 4e-27
Identities = 59/75 (78%), Positives = 65/75 (86%)
Frame = -2
Query: 567 MMENIEKVLDRGEKIELLVDKTDTLRSQAQDFRQQGTQIRRKMWFPNMKIKLIVAGIIVL 388
MMENIEKVLDRGEKIELLVDKT+ LRSQAQDFRQ GTQ+RRKMW NMKIKLIV GII+
Sbjct: 145 MMENIEKVLDRGEKIELLVDKTENLRSQAQDFRQAGTQVRRKMWLQNMKIKLIVLGIIIA 204
Query: 387 LILILIISICGSLNC 343
LILI+I+S+C C
Sbjct: 205 LILIIILSVCHGFKC 219
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,881,827
Number of Sequences: 1393205
Number of extensions: 9606190
Number of successful extensions: 46949
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 27571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40358
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
