Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003782A_C01 KMC003782A_c01
(739 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC32669.1| unnamed protein product [Mus musculus] 35 0.85
ref|NP_568700.1| putative protein; protein id: At5g48500.1, supp... 35 1.1
ref|NP_113524.1| hypothetical protein [Guillardia theta] gi|1258... 33 3.2
ref|NP_568362.1| putative protein; protein id: At5g18310.1, supp... 33 4.2
ref|NP_033150.1| spinocerebellar ataxia 1 homolog [Mus musculus]... 33 4.2
>dbj|BAC32669.1| unnamed protein product [Mus musculus]
Length = 142
Score = 35.4 bits (80), Expect = 0.85
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -2
Query: 675 GKVWDVTEHPRKHHDGVPPPAPPRAPKPVDEDLYKIPA 562
G+ W T+ R PPP PPRAP+P K+PA
Sbjct: 83 GRAW--TDSSRALEPRPPPPGPPRAPRPARAQQVKVPA 118
>ref|NP_568700.1| putative protein; protein id: At5g48500.1, supported by cDNA:
14816. [Arabidopsis thaliana] gi|21553505|gb|AAM62598.1|
unknown [Arabidopsis thaliana]
gi|27754391|gb|AAO22644.1| unknown protein [Arabidopsis
thaliana] gi|28393943|gb|AAO42379.1| unknown protein
[Arabidopsis thaliana]
Length = 167
Score = 35.0 bits (79), Expect = 1.1
Identities = 25/79 (31%), Positives = 35/79 (43%), Gaps = 5/79 (6%)
Frame = -2
Query: 711 PVKEGMNMRKQQGKVWDVTEHPRKHHDGVPPPAPP-----RAPKPVDEDLYKIPA*ATSQ 547
P ++ N+ KQQ + R+ + V P P +APKPVDEDLYK+ S
Sbjct: 87 PAEKKRNVSKQQH---NYKTEAREFNAPVSCPTPVVKRRMKAPKPVDEDLYKVSPQLLSV 143
Query: 546 NQEEENAGFHFQVSGTCCL 490
+ + G F C L
Sbjct: 144 KSKRKRGGGGFGCISRCFL 162
>ref|NP_113524.1| hypothetical protein [Guillardia theta] gi|12580775|emb|CAC27093.1|
hypothetical protein [Guillardia theta]
Length = 861
Score = 33.5 bits (75), Expect = 3.2
Identities = 28/96 (29%), Positives = 49/96 (50%), Gaps = 13/96 (13%)
Frame = -2
Query: 270 NLWFY*LSSLLHLIRVGACIYL*-----ITDFD--DFLLV---LCGGPVS*CHANSYKW- 124
N +FY +LH+I++ YL + DF DFL + L + + NS ++
Sbjct: 207 NFYFY-KGKILHIIKLKMLFYLIKISENVNDFKKKDFLKLEHTLINSIIQDNYDNSIQYK 265
Query: 123 --LLLMLLYFPSLHSRTNTSIRKARFMKFDLNSTNL 22
++L LL+ +++R+ TSI RF+ L++ NL
Sbjct: 266 TSIILFLLFLKKINARSKTSINYLRFINIFLSNENL 301
>ref|NP_568362.1| putative protein; protein id: At5g18310.1, supported by cDNA:
41525. [Arabidopsis thaliana] gi|21593704|gb|AAM65671.1|
unknown [Arabidopsis thaliana]
gi|24030404|gb|AAN41361.1| unknown protein [Arabidopsis
thaliana]
Length = 139
Score = 33.1 bits (74), Expect = 4.2
Identities = 19/54 (35%), Positives = 28/54 (51%)
Frame = -2
Query: 726 RERRYPVKEGMNMRKQQGKVWDVTEHPRKHHDGVPPPAPPRAPKPVDEDLYKIP 565
+E+R P + ++ Q K + ++ + V P PKPVDEDLYKIP
Sbjct: 65 KEKRGPQRRVRDVSAQSDKYYIDVNGVKQFKNDVALTCKP--PKPVDEDLYKIP 116
>ref|NP_033150.1| spinocerebellar ataxia 1 homolog [Mus musculus]
gi|1710864|sp|P54254|ATX1_MOUSE Ataxin-1
(Spinocerebellar ataxia type 1 protein homolog)
gi|1488627|emb|CAA58533.1| ataxin-1 [Mus musculus]
Length = 792
Score = 33.1 bits (74), Expect = 4.2
Identities = 29/99 (29%), Positives = 37/99 (37%), Gaps = 10/99 (10%)
Frame = +3
Query: 444 TKCPQIPTHTTVHETQGSRYQTLGNETQ----------HFLPLGSAK*LRQGSYRDLHQQ 593
T P IP H H+T TLG +Q HF+P S K QQ
Sbjct: 237 TSPPPIPVHLHPHQTMIPHTLTLGPSSQVVVQYSDAGGHFVPRESTKKAESSRL----QQ 292
Query: 594 ASELLAVPAAERRRGASWDAQSRPTLSLVASSCSYLPSP 710
A + V E + + A S LSL +S +P P
Sbjct: 293 AMQAKEVLNGEMEKSRRYGASSSVELSLGKASSKSVPHP 331
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 628,481,906
Number of Sequences: 1393205
Number of extensions: 14082505
Number of successful extensions: 61458
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 49561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60231
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
