Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003780A_C01 KMC003780A_c01
(646 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172576.1| lysophospholipase isolog; protein id: At1g11090... 74 2e-12
dbj|BAC22550.1| putative lysophospholipase isolog [Oryza sativa ... 73 3e-12
ref|NP_181474.1| putative phospholipase; protein id: At2g39420.1... 56 4e-07
gb|AAL87258.1| putative phospholipase [Arabidopsis thaliana] gi|... 56 4e-07
ref|NP_175685.1| putative lipase; protein id: At1g52760.1, suppo... 55 1e-06
>ref|NP_172576.1| lysophospholipase isolog; protein id: At1g11090.1 [Arabidopsis
thaliana] gi|25402643|pir||H86244 lysophospholipase
homolog, 25331-24357 [imported] - Arabidopsis thaliana
gi|1931639|gb|AAB65474.1| lysophospholipase isolog;
25331-24357 [Arabidopsis thaliana]
gi|26450507|dbj|BAC42367.1| putative lysophospholipase
isolog [Arabidopsis thaliana]
Length = 324
Score = 73.9 bits (180), Expect = 2e-12
Identities = 30/49 (61%), Positives = 40/49 (81%)
Frame = -1
Query: 646 EEARSEDKTIKVYEGMMHSLLFGETDENVETVRSDVLQWLNARCEGRTT 500
E A+S+DKT+K+Y+GMMHS+LFGE D+N+E VR D++ WLN RC G T
Sbjct: 272 EHAKSKDKTLKIYDGMMHSMLFGEPDDNIEIVRKDIVSWLNDRCGGDKT 320
>dbj|BAC22550.1| putative lysophospholipase isolog [Oryza sativa (japonica
cultivar-group)]
Length = 334
Score = 73.2 bits (178), Expect = 3e-12
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = -1
Query: 646 EEARSEDKTIKVYEGMMHSLLFGETDENVETVRSDVLQWLNARCEGR 506
+ A S+DKTIK+Y+GMMHS+LFGE DEN+E VR+D+L WLN RC R
Sbjct: 278 DAAASKDKTIKIYDGMMHSMLFGEPDENIERVRADILAWLNERCTPR 324
>ref|NP_181474.1| putative phospholipase; protein id: At2g39420.1, supported by cDNA:
gi_13877686 [Arabidopsis thaliana]
gi|7487948|pir||T00552 lysophospholipase homolog F12L6.8
- Arabidopsis thaliana gi|3355471|gb|AAC27833.1|
putative phospholipase [Arabidopsis thaliana]
gi|13877687|gb|AAK43921.1|AF370602_1 putative
phospholipase [Arabidopsis thaliana]
Length = 318
Score = 56.2 bits (134), Expect = 4e-07
Identities = 24/43 (55%), Positives = 32/43 (73%)
Frame = -1
Query: 646 EEARSEDKTIKVYEGMMHSLLFGETDENVETVRSDVLQWLNAR 518
E A S DKT K+Y GM H LL+GET EN+ETV +D++ WL+ +
Sbjct: 253 EVASSSDKTFKLYPGMWHGLLYGETPENIETVFADIIGWLDKK 295
>gb|AAL87258.1| putative phospholipase [Arabidopsis thaliana]
gi|21689759|gb|AAM67523.1| putative phospholipase
[Arabidopsis thaliana]
Length = 317
Score = 56.2 bits (134), Expect = 4e-07
Identities = 24/43 (55%), Positives = 32/43 (73%)
Frame = -1
Query: 646 EEARSEDKTIKVYEGMMHSLLFGETDENVETVRSDVLQWLNAR 518
E A S DKT K+Y GM H LL+GET EN+ETV +D++ WL+ +
Sbjct: 252 EVASSSDKTFKLYPGMWHGLLYGETPENIETVFADIIGWLDKK 294
>ref|NP_175685.1| putative lipase; protein id: At1g52760.1, supported by cDNA:
36954., supported by cDNA: gi_15450993 [Arabidopsis
thaliana] gi|25405597|pir||F96568 probable lipase,
20450-21648 [imported] - Arabidopsis thaliana
gi|12324637|gb|AAG52273.1|AC019018_10 putative lipase;
20450-21648 [Arabidopsis thaliana]
gi|15450994|gb|AAK96768.1| putative lipase [Arabidopsis
thaliana]
Length = 332
Score = 54.7 bits (130), Expect = 1e-06
Identities = 23/43 (53%), Positives = 32/43 (73%)
Frame = -1
Query: 646 EEARSEDKTIKVYEGMMHSLLFGETDENVETVRSDVLQWLNAR 518
E+A S DKT+K+YEGM HSL+ GE DEN E V D+ +W++ +
Sbjct: 281 EKASSADKTLKIYEGMYHSLIQGEPDENAEIVLKDMREWIDEK 323
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,144,383
Number of Sequences: 1393205
Number of extensions: 10299967
Number of successful extensions: 25699
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 25064
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25678
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
