KMC003777A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC003777A_C01 KMC003777A_c01
gagaAAAAAGTAATTTCACATTGGATTCAATTGTGAGAGTATTACTCAAGCAAACTCTGC
AGAAATTATTAATTTCTGCATACAGAAATTATTAATTTCTGCATACTGCTTTAAAGACCA
GCAACAAAATGCATCGAAGATATAGTGAATCTAAAGTACAAGGGCTAAAAAAAACTCTTA
AATTGAGGGGCTAAAAGTAATACTGTATCAAGATAAACTGAAAATAATGCAACATGAATT
CAGGGCCTCAAGAAGCACTCTAAATAGCTCAATGGTATAATATAGTTTTAATGACAAGCA
TCAAACAAAAATCCCACAAGTCAACAAATTGGATATAGTGTGGGAACATAATCTGTAACG
CCAAACATTCCAATAAACCAAGCAGCATTTCAGGCTTCTGTAATAGGATACTCGAAAACT
ACATCTTTCCCAGTAAGCTTCCTGTAAACTTTAGAAAAAGTCTCCAACTTGTATTCAGCA
TTATTGCGCTCCTTGGGGTCCAAGAAAACCTTCATTATTTTTGATCCATCAAGTCTATAT
CTGATTCTCTTGCCAACAATCTCTGAAGGATACACAACATCCTCCAGCATAGCATCATGG
ACAGCAGTTAAAGTGCGGGTTCGGGGTCGCTGAACAGCAGCCCCTTTCTTTGGAGGTCGT
ACAATCCTTCTAGTGGCAATAAAGACAACATCCTTCCCACTGAACTTCTTCTCCAGCTCT
CTGACAAGACGAGGATGAATCTTGCGGAAGGACTTCCTCAATCTGTAGGGCACATAGATG
ACTACAGCCTTGCGATTCCCAGCCACATCAACTTGAATTGCTTGGTTTATGTAGAGATCT
TTCAAATCACTCTTCACTTCATGATTGGTGTTCTCCAAATCAAACAGGTACTGTGCAACA
GTCTCCTCAAATTCAGTGGGCTCAGCCTTGTTATCCTTGCTGATTTTcttccttgaagtg
aacattttggtcaatcaaatggtgaacggagagttgcactgtgcnttcgagcgaaagggg
ggcccgt


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC003777A_C01 KMC003777A_c01
         (1027 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7 gi|3851636|gb|AAC97...   315  7e-85
gb|AAM64364.1| 40S ribosomal protein S7-like [Arabidopsis thaliana]   310  2e-83
ref|NP_197117.1| 40S ribosomal protein S7-like; protein id: At5g...   310  2e-83
gb|AAD26256.1|AF118149_1 ribosomal protein S7 [Secale cereale]        310  3e-83
gb|AAN04468.1| ribosomal protein S7 [Oryza sativa (japonica cult...   308  7e-83

>sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7 gi|3851636|gb|AAC97947.1| unknown
           [Avicennia marina] gi|4128206|gb|AAD03501.1| 40S
           ribosome protein S7 [Avicennia marina]
          Length = 190

 Score =  315 bits (807), Expect = 7e-85
 Identities = 153/190 (80%), Positives = 175/190 (91%)
 Frame = -3

Query: 965 MFTSRKKISKDNKAEPTEFEETVAQYLFDLENTNHEVKSDLKDLYINQAIQVDVAGNRKA 786
           M+T+ +KI KD  AEPTEFEE VAQ LFD ENTN E+KSDLKDLYIN A+Q+DV+G +KA
Sbjct: 1   MYTALQKIHKDKDAEPTEFEENVAQALFDFENTNQEIKSDLKDLYINSALQIDVSGGKKA 60

Query: 785 VVIYVPYRLRKSFRKIHPRLVRELEKKFSGKDVVFIATRRIVRPPKKGAAVQRPRTRTLT 606
           VVI+VPYRLRKSFRKIHPRLVRELEKKFSGK+VV IATRRI+RPPKKG+AVQRPR+RTLT
Sbjct: 61  VVIHVPYRLRKSFRKIHPRLVRELEKKFSGKEVVLIATRRILRPPKKGSAVQRPRSRTLT 120

Query: 605 AVHDAMLEDVVYPSEIVGKRIRYRLDGSKIMKVFLDPKERNNAEYKLETFSKVYRKLTGK 426
           AVHDAMLED+VYP+EIVGKR+RYRLDGSKIMKVFLDPK +N+ E KLETF+ VYRKL+GK
Sbjct: 121 AVHDAMLEDIVYPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLETFAGVYRKLSGK 180

Query: 425 DVVFEYPITE 396
           DVVFE+P+TE
Sbjct: 181 DVVFEFPLTE 190

>gb|AAM64364.1| 40S ribosomal protein S7-like [Arabidopsis thaliana]
          Length = 190

 Score =  310 bits (795), Expect = 2e-83
 Identities = 150/188 (79%), Positives = 171/188 (90%)
 Frame = -3

Query: 965 MFTSRKKISKDNKAEPTEFEETVAQYLFDLENTNHEVKSDLKDLYINQAIQVDVAGNRKA 786
           MF+++ KI+KD  AEPTE EE VAQ LFDLENTN E+KS+LKDLYINQA+ +D++GNRKA
Sbjct: 1   MFSAQNKINKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKA 60

Query: 785 VVIYVPYRLRKSFRKIHPRLVRELEKKFSGKDVVFIATRRIVRPPKKGAAVQRPRTRTLT 606
           VVIYVP+RLRK+FRKIHPRLVRELEKKFSGKDV+F+ TRRI+RPPKKGAAVQRPR RTLT
Sbjct: 61  VVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQRPRNRTLT 120

Query: 605 AVHDAMLEDVVYPSEIVGKRIRYRLDGSKIMKVFLDPKERNNAEYKLETFSKVYRKLTGK 426
           +VH+AMLEDV +P+EIVGKR RYRLDGSKIMKVFLD KE+NN EYKLET   VYRKLTGK
Sbjct: 121 SVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGK 180

Query: 425 DVVFEYPI 402
           DVVFEYP+
Sbjct: 181 DVVFEYPV 188

>ref|NP_197117.1| 40S ribosomal protein S7-like; protein id: At5g16130.1, supported
           by cDNA: 23518. [Arabidopsis thaliana]
           gi|11276554|pir||T51483 40S ribosomal protein S7-like -
           Arabidopsis thaliana gi|9755823|emb|CAC01854.1| 40S
           ribosomal protein S7-like [Arabidopsis thaliana]
          Length = 190

 Score =  310 bits (794), Expect = 2e-83
 Identities = 150/188 (79%), Positives = 170/188 (89%)
 Frame = -3

Query: 965 MFTSRKKISKDNKAEPTEFEETVAQYLFDLENTNHEVKSDLKDLYINQAIQVDVAGNRKA 786
           MF+++ KI KD  AEPTE EE VAQ LFDLENTN E+KS+LKDLYINQA+ +D++GNRKA
Sbjct: 1   MFSAQNKIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKA 60

Query: 785 VVIYVPYRLRKSFRKIHPRLVRELEKKFSGKDVVFIATRRIVRPPKKGAAVQRPRTRTLT 606
           VVIYVP+RLRK+FRKIHPRLVRELEKKFSGKDV+F+ TRRI+RPPKKGAAVQRPR RTLT
Sbjct: 61  VVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQRPRNRTLT 120

Query: 605 AVHDAMLEDVVYPSEIVGKRIRYRLDGSKIMKVFLDPKERNNAEYKLETFSKVYRKLTGK 426
           +VH+AMLEDV +P+EIVGKR RYRLDGSKIMKVFLD KE+NN EYKLET   VYRKLTGK
Sbjct: 121 SVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGK 180

Query: 425 DVVFEYPI 402
           DVVFEYP+
Sbjct: 181 DVVFEYPV 188

>gb|AAD26256.1|AF118149_1 ribosomal protein S7 [Secale cereale]
          Length = 192

 Score =  310 bits (793), Expect = 3e-83
 Identities = 150/190 (78%), Positives = 171/190 (89%)
 Frame = -3

Query: 965 MFTSRKKISKDNKAEPTEFEETVAQYLFDLENTNHEVKSDLKDLYINQAIQVDVAGNRKA 786
           M+T+RKKI KD   EP+EFE+TVAQ  FDLEN N E+KSD+KDLYIN A Q+DVAGNRKA
Sbjct: 1   MYTARKKIQKDKGLEPSEFEDTVAQAFFDLENGNQELKSDVKDLYINAAFQMDVAGNRKA 60

Query: 785 VVIYVPYRLRKSFRKIHPRLVRELEKKFSGKDVVFIATRRIVRPPKKGAAVQRPRTRTLT 606
           VVI+VPYRLRK+FRKIH RLVRELEKKFSGKDVV +ATRRIVRPPKKG+AV RPRTRTLT
Sbjct: 61  VVIHVPYRLRKNFRKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAVVRPRTRTLT 120

Query: 605 AVHDAMLEDVVYPSEIVGKRIRYRLDGSKIMKVFLDPKERNNAEYKLETFSKVYRKLTGK 426
           AVHD +LEDVVYP+EIVGKR+RYRLDGSKI+K+FLDP ERNN EYKL+TF+ VYR+L GK
Sbjct: 121 AVHDGLLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPMERNNTEYKLDTFTAVYRRLCGK 180

Query: 425 DVVFEYPITE 396
           DVV+EYP+ E
Sbjct: 181 DVVYEYPVAE 190

>gb|AAN04468.1| ribosomal protein S7 [Oryza sativa (japonica cultivar-group)]
          Length = 192

 Score =  308 bits (790), Expect = 7e-83
 Identities = 148/190 (77%), Positives = 171/190 (89%)
 Frame = -3

Query: 965 MFTSRKKISKDNKAEPTEFEETVAQYLFDLENTNHEVKSDLKDLYINQAIQVDVAGNRKA 786
           M+T+R+KI KD   EPTEFE+TVAQ  FDLEN N E+KSDLKDLYIN A+Q+D+ GNRKA
Sbjct: 1   MYTARRKIQKDKGLEPTEFEDTVAQAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKA 60

Query: 785 VVIYVPYRLRKSFRKIHPRLVRELEKKFSGKDVVFIATRRIVRPPKKGAAVQRPRTRTLT 606
           V+I+VPYRLRK+++KIH RLVRELEKKFSGKDVV +ATRRIVRPPKKG+AV RPRTRTLT
Sbjct: 61  VIIHVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLT 120

Query: 605 AVHDAMLEDVVYPSEIVGKRIRYRLDGSKIMKVFLDPKERNNAEYKLETFSKVYRKLTGK 426
           AVHD +LEDVVYP+EIVGKR+RY LDG KIMK+FLDPKERNN EYKL+TFS VYR+L GK
Sbjct: 121 AVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGK 180

Query: 425 DVVFEYPITE 396
           DVVF+YP+TE
Sbjct: 181 DVVFDYPMTE 190

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 847,460,522
Number of Sequences: 1393205
Number of extensions: 18459995
Number of successful extensions: 46676
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 44172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46487
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 59877206459
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 MWM181e10_f AV767520 1 581
2 GNf070h07 BP072582 5 417
3 MPDL058e03_f AV779449 517 1027




Lotus japonicus
Kazusa DNA Research Institute