KMC003777A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC003777A_C01 KMC003777A_c01
gagaAAAAAGTAATTTCACATTGGATTCAATTGTGAGAGTATTACTCAAGCAAACTCTGC
AGAAATTATTAATTTCTGCATACAGAAATTATTAATTTCTGCATACTGCTTTAAAGACCA
GCAACAAAATGCATCGAAGATATAGTGAATCTAAAGTACAAGGGCTAAAAAAAACTCTTA
AATTGAGGGGCTAAAAGTAATACTGTATCAAGATAAACTGAAAATAATGCAACATGAATT
CAGGGCCTCAAGAAGCACTCTAAATAGCTCAATGGTATAATATAGTTTTAATGACAAGCA
TCAAACAAAAATCCCACAAGTCAACAAATTGGATATAGTGTGGGAACATAATCTGTAACG
CCAAACATTCCAATAAACCAAGCAGCATTTCAGGCTTCTGTAATAGGATACTCGAAAACT
ACATCTTTCCCAGTAAGCTTCCTGTAAACTTTAGAAAAAGTCTCCAACTTGTATTCAGCA
TTATTGCGCTCCTTGGGGTCCAAGAAAACCTTCATTATTTTTGATCCATCAAGTCTATAT
CTGATTCTCTTGCCAACAATCTCTGAAGGATACACAACATCCTCCAGCATAGCATCATGG
ACAGCAGTTAAAGTGCGGGTTCGGGGTCGCTGAACAGCAGCCCCTTTCTTTGGAGGTCGT
ACAATCCTTCTAGTGGCAATAAAGACAACATCCTTCCCACTGAACTTCTTCTCCAGCTCT
CTGACAAGACGAGGATGAATCTTGCGGAAGGACTTCCTCAATCTGTAGGGCACATAGATG
ACTACAGCCTTGCGATTCCCAGCCACATCAACTTGAATTGCTTGGTTTATGTAGAGATCT
TTCAAATCACTCTTCACTTCATGATTGGTGTTCTCCAAATCAAACAGGTACTGTGCAACA
GTCTCCTCAAATTCAGTGGGCTCAGCCTTGTTATCCTTGCTGATTTTcttccttgaagtg
aacattttggtcaatcaaatggtgaacggagagttgcactgtgcnttcgagcgaaagggg
ggcccgt
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003777A_C01 KMC003777A_c01
(1027 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7 gi|3851636|gb|AAC97... 315 7e-85
gb|AAM64364.1| 40S ribosomal protein S7-like [Arabidopsis thaliana] 310 2e-83
ref|NP_197117.1| 40S ribosomal protein S7-like; protein id: At5g... 310 2e-83
gb|AAD26256.1|AF118149_1 ribosomal protein S7 [Secale cereale] 310 3e-83
gb|AAN04468.1| ribosomal protein S7 [Oryza sativa (japonica cult... 308 7e-83
>sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7 gi|3851636|gb|AAC97947.1| unknown
[Avicennia marina] gi|4128206|gb|AAD03501.1| 40S
ribosome protein S7 [Avicennia marina]
Length = 190
Score = 315 bits (807), Expect = 7e-85
Identities = 153/190 (80%), Positives = 175/190 (91%)
Frame = -3
Query: 965 MFTSRKKISKDNKAEPTEFEETVAQYLFDLENTNHEVKSDLKDLYINQAIQVDVAGNRKA 786
M+T+ +KI KD AEPTEFEE VAQ LFD ENTN E+KSDLKDLYIN A+Q+DV+G +KA
Sbjct: 1 MYTALQKIHKDKDAEPTEFEENVAQALFDFENTNQEIKSDLKDLYINSALQIDVSGGKKA 60
Query: 785 VVIYVPYRLRKSFRKIHPRLVRELEKKFSGKDVVFIATRRIVRPPKKGAAVQRPRTRTLT 606
VVI+VPYRLRKSFRKIHPRLVRELEKKFSGK+VV IATRRI+RPPKKG+AVQRPR+RTLT
Sbjct: 61 VVIHVPYRLRKSFRKIHPRLVRELEKKFSGKEVVLIATRRILRPPKKGSAVQRPRSRTLT 120
Query: 605 AVHDAMLEDVVYPSEIVGKRIRYRLDGSKIMKVFLDPKERNNAEYKLETFSKVYRKLTGK 426
AVHDAMLED+VYP+EIVGKR+RYRLDGSKIMKVFLDPK +N+ E KLETF+ VYRKL+GK
Sbjct: 121 AVHDAMLEDIVYPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLETFAGVYRKLSGK 180
Query: 425 DVVFEYPITE 396
DVVFE+P+TE
Sbjct: 181 DVVFEFPLTE 190
>gb|AAM64364.1| 40S ribosomal protein S7-like [Arabidopsis thaliana]
Length = 190
Score = 310 bits (795), Expect = 2e-83
Identities = 150/188 (79%), Positives = 171/188 (90%)
Frame = -3
Query: 965 MFTSRKKISKDNKAEPTEFEETVAQYLFDLENTNHEVKSDLKDLYINQAIQVDVAGNRKA 786
MF+++ KI+KD AEPTE EE VAQ LFDLENTN E+KS+LKDLYINQA+ +D++GNRKA
Sbjct: 1 MFSAQNKINKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKA 60
Query: 785 VVIYVPYRLRKSFRKIHPRLVRELEKKFSGKDVVFIATRRIVRPPKKGAAVQRPRTRTLT 606
VVIYVP+RLRK+FRKIHPRLVRELEKKFSGKDV+F+ TRRI+RPPKKGAAVQRPR RTLT
Sbjct: 61 VVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQRPRNRTLT 120
Query: 605 AVHDAMLEDVVYPSEIVGKRIRYRLDGSKIMKVFLDPKERNNAEYKLETFSKVYRKLTGK 426
+VH+AMLEDV +P+EIVGKR RYRLDGSKIMKVFLD KE+NN EYKLET VYRKLTGK
Sbjct: 121 SVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGK 180
Query: 425 DVVFEYPI 402
DVVFEYP+
Sbjct: 181 DVVFEYPV 188
>ref|NP_197117.1| 40S ribosomal protein S7-like; protein id: At5g16130.1, supported
by cDNA: 23518. [Arabidopsis thaliana]
gi|11276554|pir||T51483 40S ribosomal protein S7-like -
Arabidopsis thaliana gi|9755823|emb|CAC01854.1| 40S
ribosomal protein S7-like [Arabidopsis thaliana]
Length = 190
Score = 310 bits (794), Expect = 2e-83
Identities = 150/188 (79%), Positives = 170/188 (89%)
Frame = -3
Query: 965 MFTSRKKISKDNKAEPTEFEETVAQYLFDLENTNHEVKSDLKDLYINQAIQVDVAGNRKA 786
MF+++ KI KD AEPTE EE VAQ LFDLENTN E+KS+LKDLYINQA+ +D++GNRKA
Sbjct: 1 MFSAQNKIKKDKNAEPTECEEQVAQALFDLENTNQELKSELKDLYINQAVHMDISGNRKA 60
Query: 785 VVIYVPYRLRKSFRKIHPRLVRELEKKFSGKDVVFIATRRIVRPPKKGAAVQRPRTRTLT 606
VVIYVP+RLRK+FRKIHPRLVRELEKKFSGKDV+F+ TRRI+RPPKKGAAVQRPR RTLT
Sbjct: 61 VVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAVQRPRNRTLT 120
Query: 605 AVHDAMLEDVVYPSEIVGKRIRYRLDGSKIMKVFLDPKERNNAEYKLETFSKVYRKLTGK 426
+VH+AMLEDV +P+EIVGKR RYRLDGSKIMKVFLD KE+NN EYKLET VYRKLTGK
Sbjct: 121 SVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMVGVYRKLTGK 180
Query: 425 DVVFEYPI 402
DVVFEYP+
Sbjct: 181 DVVFEYPV 188
>gb|AAD26256.1|AF118149_1 ribosomal protein S7 [Secale cereale]
Length = 192
Score = 310 bits (793), Expect = 3e-83
Identities = 150/190 (78%), Positives = 171/190 (89%)
Frame = -3
Query: 965 MFTSRKKISKDNKAEPTEFEETVAQYLFDLENTNHEVKSDLKDLYINQAIQVDVAGNRKA 786
M+T+RKKI KD EP+EFE+TVAQ FDLEN N E+KSD+KDLYIN A Q+DVAGNRKA
Sbjct: 1 MYTARKKIQKDKGLEPSEFEDTVAQAFFDLENGNQELKSDVKDLYINAAFQMDVAGNRKA 60
Query: 785 VVIYVPYRLRKSFRKIHPRLVRELEKKFSGKDVVFIATRRIVRPPKKGAAVQRPRTRTLT 606
VVI+VPYRLRK+FRKIH RLVRELEKKFSGKDVV +ATRRIVRPPKKG+AV RPRTRTLT
Sbjct: 61 VVIHVPYRLRKNFRKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAVVRPRTRTLT 120
Query: 605 AVHDAMLEDVVYPSEIVGKRIRYRLDGSKIMKVFLDPKERNNAEYKLETFSKVYRKLTGK 426
AVHD +LEDVVYP+EIVGKR+RYRLDGSKI+K+FLDP ERNN EYKL+TF+ VYR+L GK
Sbjct: 121 AVHDGLLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPMERNNTEYKLDTFTAVYRRLCGK 180
Query: 425 DVVFEYPITE 396
DVV+EYP+ E
Sbjct: 181 DVVYEYPVAE 190
>gb|AAN04468.1| ribosomal protein S7 [Oryza sativa (japonica cultivar-group)]
Length = 192
Score = 308 bits (790), Expect = 7e-83
Identities = 148/190 (77%), Positives = 171/190 (89%)
Frame = -3
Query: 965 MFTSRKKISKDNKAEPTEFEETVAQYLFDLENTNHEVKSDLKDLYINQAIQVDVAGNRKA 786
M+T+R+KI KD EPTEFE+TVAQ FDLEN N E+KSDLKDLYIN A+Q+D+ GNRKA
Sbjct: 1 MYTARRKIQKDKGLEPTEFEDTVAQAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKA 60
Query: 785 VVIYVPYRLRKSFRKIHPRLVRELEKKFSGKDVVFIATRRIVRPPKKGAAVQRPRTRTLT 606
V+I+VPYRLRK+++KIH RLVRELEKKFSGKDVV +ATRRIVRPPKKG+AV RPRTRTLT
Sbjct: 61 VIIHVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAVVRPRTRTLT 120
Query: 605 AVHDAMLEDVVYPSEIVGKRIRYRLDGSKIMKVFLDPKERNNAEYKLETFSKVYRKLTGK 426
AVHD +LEDVVYP+EIVGKR+RY LDG KIMK+FLDPKERNN EYKL+TFS VYR+L GK
Sbjct: 121 AVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRRLCGK 180
Query: 425 DVVFEYPITE 396
DVVF+YP+TE
Sbjct: 181 DVVFDYPMTE 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 847,460,522
Number of Sequences: 1393205
Number of extensions: 18459995
Number of successful extensions: 46676
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 44172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46487
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 59877206459
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
MWM181e10_f |
AV767520 |
1 |
581 |
2 |
GNf070h07 |
BP072582 |
5 |
417 |
3 |
MPDL058e03_f |
AV779449 |
517 |
1027 |
|
Lotus japonicus
Kazusa DNA Research Institute