Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003776A_C02 KMC003776A_c02
(483 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178108.1| mitochondrial carrier protein family; protein i... 47 8e-05
gb|AAM64990.1| putative carnitine/acylcarnitine translocase [Ara... 47 8e-05
ref|NP_147952.1| hypothetical protein [Aeropyrum pernix] gi|7516... 32 2.8
ref|NP_586476.1| similarity to HYPOTHETICAL TRANSMEMBRANE PROTEI... 31 8.1
>ref|NP_178108.1| mitochondrial carrier protein family; protein id: At1g79900.1,
supported by cDNA: 35499., supported by cDNA:
gi_17529159, supported by cDNA: gi_20465852 [Arabidopsis
thaliana] gi|25406613|pir||B96830 hypothetical protein
F19K16.14 [imported] - Arabidopsis thaliana
gi|12324589|gb|AAG52250.1|AC011717_18 putative
carnitine/acylcarnitine translocase; 50581-51656
[Arabidopsis thaliana] gi|17529160|gb|AAL38806.1|
putative carnitine/acylcarnitine translocase
[Arabidopsis thaliana] gi|20465853|gb|AAM20031.1|
putative carnitine/acylcarnitine translocase
[Arabidopsis thaliana]
Length = 296
Score = 47.4 bits (111), Expect = 8e-05
Identities = 23/42 (54%), Positives = 29/42 (68%)
Frame = -2
Query: 266 SLQYTIVLQTYAVLSRAFDSSVSVKDPHSYNGVDLGGVRTRA 141
+ Q +V Q YA+ SR+FDSSV + +P SY GV LGGV T A
Sbjct: 77 TFQNAMVFQIYAIFSRSFDSSVPLVEPPSYRGVALGGVATGA 118
>gb|AAM64990.1| putative carnitine/acylcarnitine translocase [Arabidopsis thaliana]
Length = 296
Score = 47.4 bits (111), Expect = 8e-05
Identities = 23/42 (54%), Positives = 29/42 (68%)
Frame = -2
Query: 266 SLQYTIVLQTYAVLSRAFDSSVSVKDPHSYNGVDLGGVRTRA 141
+ Q +V Q YA+ SR+FDSSV + +P SY GV LGGV T A
Sbjct: 77 TFQNAMVFQIYAIFSRSFDSSVPLVEPPSYRGVALGGVATGA 118
>ref|NP_147952.1| hypothetical protein [Aeropyrum pernix] gi|7516507|pir||B72624
hypothetical protein APE1450 - Aeropyrum pernix (strain
K1) gi|5105134|dbj|BAA80448.1| 230aa long hypothetical
protein [Aeropyrum pernix]
Length = 230
Score = 32.3 bits (72), Expect = 2.8
Identities = 19/48 (39%), Positives = 30/48 (61%), Gaps = 1/48 (2%)
Frame = +2
Query: 260 EENKRNITLGPSPVAKWKSLVMVLQLPH-YGLNNFPARESEK*NPSEL 400
E + RN+TL P A W++L +VL+ YG++ F A ++E+ P EL
Sbjct: 147 EVSLRNLTLNPGSPAAWRALAVVLRRSFAYGVHVFLASDAEE--PHEL 192
>ref|NP_586476.1| similarity to HYPOTHETICAL TRANSMEMBRANE PROTEIN YADA_SCHPO
[Encephalitozoon cuniculi] gi|19069695|emb|CAD26080.1|
similarity to HYPOTHETICAL TRANSMEMBRANE PROTEIN
YADA_SCHPO [Encephalitozoon cuniculi]
Length = 320
Score = 30.8 bits (68), Expect = 8.1
Identities = 12/47 (25%), Positives = 22/47 (46%)
Frame = +2
Query: 50 LNSNLYCLFEHNFFTS*LKLNTKGEEINFRRPWYELLLSQHHCKNEG 190
++ ++C E+ F TK ++ + WY+L+ CKN G
Sbjct: 16 ISEEVFCTNEYGFVVDSFSSQTKDNPVSIKNEWYDLIT---RCKNSG 59
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 396,224,269
Number of Sequences: 1393205
Number of extensions: 7838634
Number of successful extensions: 13652
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13652
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13689082854
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
