Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003775A_C01 KMC003775A_c01
(685 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187789.1| putative T-complex protein 1, ETA subunit; prot... 100 1e-20
gb|EAA29703.1| hypothetical protein [Neurospora crassa] 73 3e-12
ref|NP_012424.1| Required for assembly of microtubules and actin... 70 4e-11
gb|AAM12860.1|AF494046_1 chaperonin containing TCP-1 eta subunit... 69 6e-11
gb|AAL27405.1|AF427597_1 chaperonin subunit 1 [Artemia franciscana] 68 1e-10
>ref|NP_187789.1| putative T-complex protein 1, ETA subunit; protein id: At3g11830.1,
supported by cDNA: gi_17979242, supported by cDNA:
gi_20857171 [Arabidopsis thaliana]
gi|6671939|gb|AAF23199.1|AC016795_12 putative T-complex
protein 1, ETA subunit [Arabidopsis thaliana]
gi|17979243|gb|AAL49938.1| AT3g11830/F26K24_12
[Arabidopsis thaliana] gi|20857172|gb|AAM26704.1|
AT3g11830/F26K24_12 [Arabidopsis thaliana]
Length = 557
Score = 100 bits (250), Expect = 1e-20
Identities = 53/65 (81%), Positives = 57/65 (87%)
Frame = -3
Query: 683 FVWEPALVKINAINAATEAACLVLSVDETVTNPKSESAQGEAAASAMGGRGRGGGFRGRG 504
FVWEPA+VKINAINAATEAACL+LSVDETV NPKSESAQG+AA + GRGRGG GRG
Sbjct: 497 FVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGDAAGAM--GRGRGG---GRG 551
Query: 503 RGMRR 489
RGMRR
Sbjct: 552 RGMRR 556
>gb|EAA29703.1| hypothetical protein [Neurospora crassa]
Length = 557
Score = 73.2 bits (178), Expect = 3e-12
Identities = 37/65 (56%), Positives = 44/65 (66%)
Frame = -3
Query: 683 FVWEPALVKINAINAATEAACLVLSVDETVTNPKSESAQGEAAASAMGGRGRGGGFRGRG 504
FVWEPAL+KINA+ AATEAACL+L VDET+ N +S++ Q G R RGRG
Sbjct: 494 FVWEPALIKINALQAATEAACLILGVDETIRNEESQAPQAPGQKLPPGAAQR--ALRGRG 551
Query: 503 RGMRR 489
RGM R
Sbjct: 552 RGMPR 556
>ref|NP_012424.1| Required for assembly of microtubules and actin in vivo; Cct7p
[Saccharomyces cerevisiae]
gi|1174619|sp|P42943|TCPH_YEAST T-COMPLEX PROTEIN 1, ETA
SUBUNIT (TCP-1-ETA) (CCT-ETA) gi|1078409|pir||S53376
t-complex protein 1 homolog YJL111w - yeast
(Saccharomyces cerevisiae) gi|728699|emb|CAA59383.1|
TCP-1 homologue [Saccharomyces cerevisiae]
gi|1008297|emb|CAA89406.1| ORF YJL111w [Saccharomyces
cerevisiae]
Length = 550
Score = 69.7 bits (169), Expect = 4e-11
Identities = 35/53 (66%), Positives = 39/53 (73%)
Frame = -3
Query: 683 FVWEPALVKINAINAATEAACLVLSVDETVTNPKSESAQGEAAASAMGGRGRG 525
FVWEPALVKINA+N+ATEA L+LSVDET+TN SESA GRGRG
Sbjct: 495 FVWEPALVKINALNSATEATNLILSVDETITNKGSESANAGMMPPQGAGRGRG 547
>gb|AAM12860.1|AF494046_1 chaperonin containing TCP-1 eta subunit [Physarum polycephalum]
Length = 552
Score = 68.9 bits (167), Expect = 6e-11
Identities = 37/62 (59%), Positives = 40/62 (63%), Gaps = 1/62 (1%)
Frame = -3
Query: 683 FVWEPALVKINAINAATEAACLVLSVDETVTNPKSESAQGEAAASAMGGRGRGGGFRG-R 507
FVWEP L+K N+ AATEAACL+LSVDETV N SE Q A G RG G G R R
Sbjct: 490 FVWEPTLIKTNSFTAATEAACLILSVDETVRNAASEKPQAGPAMPRGGMRGMGRGVRAMR 549
Query: 506 GR 501
GR
Sbjct: 550 GR 551
>gb|AAL27405.1|AF427597_1 chaperonin subunit 1 [Artemia franciscana]
Length = 541
Score = 68.2 bits (165), Expect = 1e-10
Identities = 37/61 (60%), Positives = 41/61 (66%)
Frame = -3
Query: 680 VWEPALVKINAINAATEAACLVLSVDETVTNPKSESAQGEAAASAMGGRGRGGGFRGRGR 501
VWEP+LVKINA+ AA+EAACL+LSVDETV NPKS GG GG GRGR
Sbjct: 490 VWEPSLVKINALTAASEAACLILSVDETVKNPKS------------GGGDMGGMPAGRGR 537
Query: 500 G 498
G
Sbjct: 538 G 538
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,814,273
Number of Sequences: 1393205
Number of extensions: 12521602
Number of successful extensions: 89503
Number of sequences better than 10.0: 186
Number of HSP's better than 10.0 without gapping: 58268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81670
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
