Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003773A_C01 KMC003773A_c01
(587 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD40580.1| oj000126_13.2 [Oryza sativa (japonica cultivar-g... 57 5e-08
gb|AAH48027.1| Similar to cold inducible RNA binding protein [Da... 54 1e-06
ref|NP_196239.1| RRM-containing protein; protein id: At5g06210.1... 53 3e-06
gb|AAF31404.1|AF200323_1 putative glycine-rich RNA-binding prote... 52 4e-06
sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 gi|48542... 52 7e-06
>emb|CAD40580.1| oj000126_13.2 [Oryza sativa (japonica cultivar-group)]
Length = 158
Score = 57.0 bits (136), Expect(2) = 5e-08
Identities = 29/49 (59%), Positives = 36/49 (73%)
Frame = -1
Query: 587 AEAFSQYGKVLKADIVLNRAKTRSQGFGYVTFAKEEDAQKAQIGMNRKV 441
AEAFSQYG+VL+A IV ++ R +GFG+V FA EE A KA+ MN KV
Sbjct: 75 AEAFSQYGQVLEATIVTDKMTNRPKGFGFVKFASEEAANKAKEEMNGKV 123
Score = 21.6 bits (44), Expect(2) = 5e-08
Identities = 7/12 (58%), Positives = 12/12 (99%)
Frame = -3
Query: 336 QILHGRVLYVDM 301
++L+GRV+YVD+
Sbjct: 122 KVLNGRVIYVDI 133
>gb|AAH48027.1| Similar to cold inducible RNA binding protein [Danio rerio]
Length = 184
Score = 53.9 bits (128), Expect = 1e-06
Identities = 24/47 (51%), Positives = 32/47 (68%)
Frame = -1
Query: 584 EAFSQYGKVLKADIVLNRAKTRSQGFGYVTFAKEEDAQKAQIGMNRK 444
EAFS+YG + K D++ +R RS+GFG+VTF EDA+ A MN K
Sbjct: 23 EAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAMNGK 69
>ref|NP_196239.1| RRM-containing protein; protein id: At5g06210.1, supported by cDNA:
36764., supported by cDNA: gi_17065275, supported by
cDNA: gi_20260001 [Arabidopsis thaliana]
gi|9759319|dbj|BAB09686.1| contains similarity to
RNA-binding protein~gene_id:MBL20.9 [Arabidopsis
thaliana] gi|17065276|gb|AAL32792.1| Unknown protein
[Arabidopsis thaliana] gi|20260002|gb|AAM13348.1|
unknown protein [Arabidopsis thaliana]
gi|21593170|gb|AAM65119.1| unknown [Arabidopsis
thaliana]
Length = 146
Score = 52.8 bits (125), Expect = 3e-06
Identities = 24/46 (52%), Positives = 36/46 (78%)
Frame = -1
Query: 587 AEAFSQYGKVLKADIVLNRAKTRSQGFGYVTFAKEEDAQKAQIGMN 450
+EAFS+ G+V++A IV++R RS+GFG+VTFA ++AQKA + N
Sbjct: 51 SEAFSKCGQVVEAQIVMDRVSDRSKGFGFVTFASADEAQKALMEFN 96
>gb|AAF31404.1|AF200323_1 putative glycine-rich RNA-binding protein 2 [Catharanthus roseus]
Length = 160
Score = 52.4 bits (124), Expect = 4e-06
Identities = 23/46 (50%), Positives = 35/46 (76%)
Frame = -1
Query: 587 AEAFSQYGKVLKADIVLNRAKTRSQGFGYVTFAKEEDAQKAQIGMN 450
+EAFSQYG+VL++ ++ +R RS+GFG+VTF E+ + A +GMN
Sbjct: 25 SEAFSQYGEVLESKVINDRETGRSRGFGFVTFGDEKSMKDAIVGMN 70
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 gi|485420|pir||S12311
glycine-rich RNA-binding protein (clone S1) - sorghum
(fragment) gi|21623|emb|CAA40863.1| glycine-rich
RNA-binding protein [Sorghum bicolor]
Length = 142
Score = 51.6 bits (122), Expect = 7e-06
Identities = 25/46 (54%), Positives = 34/46 (73%)
Frame = -1
Query: 581 AFSQYGKVLKADIVLNRAKTRSQGFGYVTFAKEEDAQKAQIGMNRK 444
AFS YG+VL++ I+L+R RS+GFG+VTF+ EE + A GMN K
Sbjct: 6 AFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGK 51
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,204,981
Number of Sequences: 1393205
Number of extensions: 8854061
Number of successful extensions: 19316
Number of sequences better than 10.0: 889
Number of HSP's better than 10.0 without gapping: 18355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19275
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
