Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003772A_C01 KMC003772A_c01
(713 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02864.1| prolyl 4-hydroxylase alpha subunit-like protein ... 152 1e-44
ref|NP_566838.1| prolyl 4-hydroxylase, putative; protein id: At3... 152 1e-44
gb|AAL57673.1| AT3g28480/MFJ20_16 [Arabidopsis thaliana] gi|2479... 152 1e-44
gb|AAO42145.1| putative prolyl 4-hydroxylase [Arabidopsis thaliana] 147 6e-42
gb|AAO72374.1| putative oxidoreductase [Oryza sativa (japonica c... 143 1e-41
>dbj|BAB02864.1| prolyl 4-hydroxylase alpha subunit-like protein [Arabidopsis
thaliana]
Length = 332
Score = 152 bits (385), Expect(3) = 1e-44
Identities = 69/93 (74%), Positives = 80/93 (85%)
Frame = -1
Query: 713 MYLSDVGKGGETIFPHAESKLSQPKDESWSECAHKGYAVKPRKGDALLFFSLHLNATTDS 534
MYLS+V KGGET+FP + K +Q KD+SW+ECA +GYAVKPRKGDALLFF+LH NATTDS
Sbjct: 195 MYLSNVEKGGETVFPMWKGKATQLKDDSWTECAKQGYAVKPRKGDALLFFNLHPNATTDS 254
Query: 533 NSLHGSCPVIEGEKWSATKWIHVSDFEKAITAQ 435
NSLHGSCPV+EGEKWSAT+WIHV FE+A Q
Sbjct: 255 NSLHGSCPVVEGEKWSATRWIHVKSFERAFNKQ 287
Score = 39.3 bits (90), Expect(3) = 1e-44
Identities = 14/21 (66%), Positives = 16/21 (75%)
Frame = -3
Query: 420 CTDENENCSRWAKLGECVKNP 358
C DEN +C +WAK GEC KNP
Sbjct: 290 CMDENVSCEKWAKAGECQKNP 310
Score = 31.2 bits (69), Expect(3) = 1e-44
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 370 CEEPTLTMIGGKGVKGYCMKSCNVCSS 290
C++ M+G GYC KSC CSS
Sbjct: 306 CQKNPTYMVGSDKDHGYCRKSCKACSS 332
>ref|NP_566838.1| prolyl 4-hydroxylase, putative; protein id: At3g28480.1, supported
by cDNA: 8330., supported by cDNA: gi_18086436
[Arabidopsis thaliana] gi|21617881|gb|AAM66931.1| prolyl
4-hydroxylase, putative [Arabidopsis thaliana]
Length = 316
Score = 152 bits (385), Expect(3) = 1e-44
Identities = 69/93 (74%), Positives = 80/93 (85%)
Frame = -1
Query: 713 MYLSDVGKGGETIFPHAESKLSQPKDESWSECAHKGYAVKPRKGDALLFFSLHLNATTDS 534
MYLS+V KGGET+FP + K +Q KD+SW+ECA +GYAVKPRKGDALLFF+LH NATTDS
Sbjct: 179 MYLSNVEKGGETVFPMWKGKATQLKDDSWTECAKQGYAVKPRKGDALLFFNLHPNATTDS 238
Query: 533 NSLHGSCPVIEGEKWSATKWIHVSDFEKAITAQ 435
NSLHGSCPV+EGEKWSAT+WIHV FE+A Q
Sbjct: 239 NSLHGSCPVVEGEKWSATRWIHVKSFERAFNKQ 271
Score = 39.3 bits (90), Expect(3) = 1e-44
Identities = 14/21 (66%), Positives = 16/21 (75%)
Frame = -3
Query: 420 CTDENENCSRWAKLGECVKNP 358
C DEN +C +WAK GEC KNP
Sbjct: 274 CMDENVSCEKWAKAGECQKNP 294
Score = 31.2 bits (69), Expect(3) = 1e-44
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 370 CEEPTLTMIGGKGVKGYCMKSCNVCSS 290
C++ M+G GYC KSC CSS
Sbjct: 290 CQKNPTYMVGSDKDHGYCRKSCKACSS 316
>gb|AAL57673.1| AT3g28480/MFJ20_16 [Arabidopsis thaliana]
gi|24796986|gb|AAN64505.1| At3g28480/MFJ20_16
[Arabidopsis thaliana]
Length = 316
Score = 152 bits (385), Expect(3) = 1e-44
Identities = 69/93 (74%), Positives = 80/93 (85%)
Frame = -1
Query: 713 MYLSDVGKGGETIFPHAESKLSQPKDESWSECAHKGYAVKPRKGDALLFFSLHLNATTDS 534
MYLS+V KGGET+FP + K +Q KD+SW+ECA +GYAVKPRKGDALLFF+LH NATTDS
Sbjct: 179 MYLSNVEKGGETVFPMWKGKATQLKDDSWTECAKQGYAVKPRKGDALLFFNLHPNATTDS 238
Query: 533 NSLHGSCPVIEGEKWSATKWIHVSDFEKAITAQ 435
NSLHGSCPV+EGEKWSAT+WIHV FE+A Q
Sbjct: 239 NSLHGSCPVVEGEKWSATRWIHVKSFERAFNKQ 271
Score = 39.3 bits (90), Expect(3) = 1e-44
Identities = 14/21 (66%), Positives = 16/21 (75%)
Frame = -3
Query: 420 CTDENENCSRWAKLGECVKNP 358
C DEN +C +WAK GEC KNP
Sbjct: 274 CMDENVSCEKWAKAGECQKNP 294
Score = 31.2 bits (69), Expect(3) = 1e-44
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 370 CEEPTLTMIGGKGVKGYCMKSCNVCSS 290
C++ M+G GYC KSC CSS
Sbjct: 290 CQKNPTYMVGSDKDHGYCRKSCKACSS 316
>gb|AAO42145.1| putative prolyl 4-hydroxylase [Arabidopsis thaliana]
Length = 253
Score = 147 bits (371), Expect(3) = 6e-42
Identities = 67/88 (76%), Positives = 76/88 (86%)
Frame = -1
Query: 713 MYLSDVGKGGETIFPHAESKLSQPKDESWSECAHKGYAVKPRKGDALLFFSLHLNATTDS 534
MYLS+V KGGET+FP+ + K Q KD+SWS+CA +GYAVKPRKGDALLFF+LHLN TTD
Sbjct: 121 MYLSNVTKGGETVFPNWKGKTPQLKDDSWSKCAKQGYAVKPRKGDALLFFNLHLNGTTDP 180
Query: 533 NSLHGSCPVIEGEKWSATKWIHVSDFEK 450
NSLHGSCPVIEGEKWSAT+WIHV F K
Sbjct: 181 NSLHGSCPVIEGEKWSATRWIHVRSFGK 208
Score = 37.0 bits (84), Expect(3) = 6e-42
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 420 CTDENENCSRWAKLGECVKNPL 355
C D++E+C WA GEC KNP+
Sbjct: 213 CVDDHESCQEWADAGECEKNPM 234
Score = 29.6 bits (65), Expect(3) = 6e-42
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 370 CEEPTLTMIGGKGVKGYCMKSCNVC 296
CE+ + M+G + G+C KSC C
Sbjct: 229 CEKNPMYMVGSETSLGFCRKSCKAC 253
>gb|AAO72374.1| putative oxidoreductase [Oryza sativa (japonica cultivar-group)]
Length = 299
Score = 143 bits (360), Expect(3) = 1e-41
Identities = 65/87 (74%), Positives = 74/87 (84%)
Frame = -1
Query: 713 MYLSDVGKGGETIFPHAESKLSQPKDESWSECAHKGYAVKPRKGDALLFFSLHLNATTDS 534
MYL+DV KGGET+FP+A + Q KDE+WS+CA G AVKP+KGDALLFFSLH+NATTD
Sbjct: 160 MYLTDVKKGGETVFPNAAGRHLQLKDETWSDCARSGLAVKPKKGDALLFFSLHVNATTDP 219
Query: 533 NSLHGSCPVIEGEKWSATKWIHVSDFE 453
SLHGSCPVIEGEKWSATKWIHV F+
Sbjct: 220 ASLHGSCPVIEGEKWSATKWIHVRSFD 246
Score = 41.6 bits (96), Expect(3) = 1e-41
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = -3
Query: 420 CTDENENCSRWAKLGECVKNP 358
C+DENE C+RWA +GEC +NP
Sbjct: 257 CSDENERCTRWAAVGECYRNP 277
Score = 28.1 bits (61), Expect(3) = 1e-41
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -2
Query: 349 MIGGKGVKGYCMKSCNVCSS 290
M+G K G+C KSC VC +
Sbjct: 280 MVGTKDSLGFCRKSCGVCDA 299
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 606,956,331
Number of Sequences: 1393205
Number of extensions: 12685495
Number of successful extensions: 32120
Number of sequences better than 10.0: 128
Number of HSP's better than 10.0 without gapping: 30828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32024
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
