Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003771A_C01 KMC003771A_c01
(417 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43661.1| unknown protein [Arabidopsis thaliana] gi|284167... 72 6e-15
dbj|BAB19328.1| hypothetical protein [Oryza sativa (japonica cul... 62 2e-09
ref|NP_609565.1| CG5446-PA [Drosophila melanogaster] gi|7297944|... 59 1e-08
gb|AAM15928.1| heat shock factor-binding protein 1 [Zea mays] gi... 58 2e-08
gb|EAA14420.1| agCP8183 [Anopheles gambiae str. PEST] 58 3e-08
>dbj|BAC43661.1| unknown protein [Arabidopsis thaliana] gi|28416759|gb|AAO42910.1|
At4g15810 [Arabidopsis thaliana]
Length = 86
Score = 72.4 bits (176), Expect(2) = 6e-15
Identities = 35/38 (92%), Positives = 37/38 (97%)
Frame = -2
Query: 416 FVQNLLQQMQSRFQTMSDSIVTKIDDMGSRINELEQSI 303
FVQNLLQQMQ+RFQTMSDSI+TKIDDMG RINELEQSI
Sbjct: 19 FVQNLLQQMQTRFQTMSDSIITKIDDMGGRINELEQSI 56
Score = 28.1 bits (61), Expect(2) = 6e-15
Identities = 13/24 (54%), Positives = 18/24 (74%), Gaps = 2/24 (8%)
Frame = -3
Query: 301 HDLRAEMGVESSPSPVAPA--QPK 236
+DLRAEMGVE +P P + + +PK
Sbjct: 57 NDLRAEMGVEGTPPPASKSGDEPK 80
>dbj|BAB19328.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 99
Score = 61.6 bits (148), Expect = 2e-09
Identities = 28/38 (73%), Positives = 37/38 (96%)
Frame = -2
Query: 416 FVQNLLQQMQSRFQTMSDSIVTKIDDMGSRINELEQSI 303
FVQNLL QMQ+RFQ+MS++I++KID+MG+RI+ELEQSI
Sbjct: 32 FVQNLLMQMQTRFQSMSENIISKIDEMGARIDELEQSI 69
>ref|NP_609565.1| CG5446-PA [Drosophila melanogaster] gi|7297944|gb|AAF53188.1|
CG5446-PA [Drosophila melanogaster]
Length = 86
Score = 59.3 bits (142), Expect = 1e-08
Identities = 26/38 (68%), Positives = 35/38 (91%)
Frame = -2
Query: 416 FVQNLLQQMQSRFQTMSDSIVTKIDDMGSRINELEQSI 303
+VQNLLQ +Q +FQTMSD I+T+IDDMG+RI++LE+SI
Sbjct: 33 YVQNLLQNVQDKFQTMSDQIITRIDDMGNRIDDLEKSI 70
>gb|AAM15928.1| heat shock factor-binding protein 1 [Zea mays]
gi|20257534|gb|AAM15929.1|AF494285_1 heat shock
factor-binding protein 1 [Zea mays]
Length = 78
Score = 58.2 bits (139), Expect = 2e-08
Identities = 27/38 (71%), Positives = 36/38 (94%)
Frame = -2
Query: 416 FVQNLLQQMQSRFQTMSDSIVTKIDDMGSRINELEQSI 303
FVQNLL QMQ+RF++MS +IV+KID+MG++I+ELEQSI
Sbjct: 16 FVQNLLGQMQTRFESMSQNIVSKIDEMGTKIDELEQSI 53
>gb|EAA14420.1| agCP8183 [Anopheles gambiae str. PEST]
Length = 120
Score = 57.8 bits (138), Expect = 3e-08
Identities = 25/38 (65%), Positives = 35/38 (91%)
Frame = -2
Query: 416 FVQNLLQQMQSRFQTMSDSIVTKIDDMGSRINELEQSI 303
+VQNLLQ +Q +FQTMSD I+++IDDMG+RI++LE+SI
Sbjct: 69 YVQNLLQNVQDKFQTMSDQIISRIDDMGTRIDDLEKSI 106
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,492,602
Number of Sequences: 1393205
Number of extensions: 7903227
Number of successful extensions: 24696
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 23755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24682
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
