Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003762A_C01 KMC003762A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA92699.1| type 2A protein phosphatase-3 [Vicia faba] 115 6e-25
sp|Q06009|P2A_MEDSA SERINE/THREONINE PROTEIN PHOSPHATASE PP2A CA... 115 6e-25
sp|O04860|P2A5_TOBAC Serine/threonine protein phosphatase PP2A-5... 112 3e-24
sp|Q9SBW3|P2A4_ORYSA Serine/threonine protein phosphatase PP2A-4... 111 7e-24
pir||S31163 phosphoprotein phosphatase (EC 3.1.3.16) 2A-alpha ca... 111 7e-24
>dbj|BAA92699.1| type 2A protein phosphatase-3 [Vicia faba]
Length = 313
Score = 115 bits (287), Expect = 6e-25
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = -2
Query: 626 IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 474
IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL
Sbjct: 263 IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 313
>sp|Q06009|P2A_MEDSA SERINE/THREONINE PROTEIN PHOSPHATASE PP2A CATALYTIC SUBUNIT
gi|486805|pir||S35502 phosphoprotein phosphatase (EC
3.1.3.16) 2A - alfalfa gi|287811|emb|CAA49849.1|
phosphoprotein phosphatase type 2A [Medicago sativa]
Length = 313
Score = 115 bits (287), Expect = 6e-25
Identities = 51/51 (100%), Positives = 51/51 (100%)
Frame = -2
Query: 626 IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 474
IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL
Sbjct: 263 IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 313
>sp|O04860|P2A5_TOBAC Serine/threonine protein phosphatase PP2A-5 catalytic subunit
gi|7435121|pir||T03600 phosphoprotein phosphatase (EC
3.1.3.16) 2A, npp5 - common tobacco
gi|1929412|emb|CAB07807.1| protein phosphatase type 2A
[Nicotiana tabacum]
Length = 314
Score = 112 bits (281), Expect = 3e-24
Identities = 49/51 (96%), Positives = 51/51 (99%)
Frame = -2
Query: 626 IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 474
IFSAPNYCYRCGNMASILEVDDC+GHTFIQF+PAPRRGEPDVTRRTPDYFL
Sbjct: 264 IFSAPNYCYRCGNMASILEVDDCRGHTFIQFDPAPRRGEPDVTRRTPDYFL 314
>sp|Q9SBW3|P2A4_ORYSA Serine/threonine protein phosphatase PP2A-4 catalytic subunit
gi|5714762|gb|AAD48068.1|AF173881_1 serine/threonine
protein phosphatase PP2A-4 catalytic subunit [Oryza
sativa subsp. indica]
Length = 315
Score = 111 bits (278), Expect = 7e-24
Identities = 49/51 (96%), Positives = 50/51 (97%)
Frame = -2
Query: 626 IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 474
IFSAPNYCYRCGNMASILEVDDC+ HTFIQFEPAPRRGEPDVTRRTPDYFL
Sbjct: 265 IFSAPNYCYRCGNMASILEVDDCRNHTFIQFEPAPRRGEPDVTRRTPDYFL 315
>pir||S31163 phosphoprotein phosphatase (EC 3.1.3.16) 2A-alpha catalytic chain
(clone EP7) - Arabidopsis thaliana (fragment)
Length = 308
Score = 111 bits (278), Expect = 7e-24
Identities = 49/51 (96%), Positives = 50/51 (97%)
Frame = -2
Query: 626 IFSAPNYCYRCGNMASILEVDDCKGHTFIQFEPAPRRGEPDVTRRTPDYFL 474
IFSAPNYCYRCGNMASILEVDDC+ HTFIQFEPAPRRGEPDVTRRTPDYFL
Sbjct: 258 IFSAPNYCYRCGNMASILEVDDCRNHTFIQFEPAPRRGEPDVTRRTPDYFL 308
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,347,522
Number of Sequences: 1393205
Number of extensions: 12097097
Number of successful extensions: 28355
Number of sequences better than 10.0: 183
Number of HSP's better than 10.0 without gapping: 27394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28333
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
