Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003755A_C03 KMC003755A_c03
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T49121 receptor like protein - Arabidopsis thaliana (fragme... 155 4e-37
ref|NP_193945.1| receptor like protein (fragment); protein id: A... 155 4e-37
gb|AAO37525.1| putative DNA-binding protein [Oryza sativa (japon... 114 1e-24
dbj|BAA82157.1| Zinc-finger motif [Triticum aestivum] 113 2e-24
pir||S44281 ES43 protein - barley gi|1345528|emb|CAA54682.1| ES4... 111 6e-24
>pir||T49121 receptor like protein - Arabidopsis thaliana (fragment)
gi|25367621|pir||C85253 receptor like protein (partial)
[imported] - Arabidopsis thaliana
gi|3046693|emb|CAA18117.1| receptor like protein
(fragment) [Arabidopsis thaliana]
gi|7269059|emb|CAB79169.1| receptor like protein
(fragment) [Arabidopsis thaliana]
Length = 201
Score = 155 bits (392), Expect = 4e-37
Identities = 68/79 (86%), Positives = 72/79 (91%)
Frame = -3
Query: 582 AFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLEHFVCSECSSDD 403
AFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKL+HFVC+ECSSDD
Sbjct: 106 AFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCAECSSDD 165
Query: 402 DMKKPQATFHVSPGSDIKV 346
D+KK Q F SP D+KV
Sbjct: 166 DVKKSQNGFTSSPADDVKV 184
>ref|NP_193945.1| receptor like protein (fragment); protein id: At4g22140.1
[Arabidopsis thaliana] gi|23296390|gb|AAN13058.1|
putative receptor protein [Arabidopsis thaliana]
Length = 196
Score = 155 bits (392), Expect = 4e-37
Identities = 68/79 (86%), Positives = 72/79 (91%)
Frame = -3
Query: 582 AFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLEHFVCSECSSDD 403
AFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKL+HFVC+ECSSDD
Sbjct: 101 AFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCAECSSDD 160
Query: 402 DMKKPQATFHVSPGSDIKV 346
D+KK Q F SP D+KV
Sbjct: 161 DVKKSQNGFTSSPADDVKV 179
>gb|AAO37525.1| putative DNA-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 218
Score = 114 bits (284), Expect = 1e-24
Identities = 49/86 (56%), Positives = 66/86 (75%)
Frame = -3
Query: 582 AFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLEHFVCSECSSDD 403
+F PDR+AV+CKCEMPYNPD+LM+QCE C DW+HP+CV +TI+EAKKLEHF C C +++
Sbjct: 134 SFVPDRIAVFCKCEMPYNPDNLMIQCEDCSDWFHPSCVEITIKEAKKLEHFYCKSCIAEN 193
Query: 402 DMKKPQATFHVSPGSDIKVEPKRRKR 325
K Q + + S+ KV+ KRR+R
Sbjct: 194 G-KDLQKSNGATVQSEEKVQSKRRRR 218
>dbj|BAA82157.1| Zinc-finger motif [Triticum aestivum]
Length = 71
Score = 113 bits (283), Expect = 2e-24
Identities = 46/70 (65%), Positives = 59/70 (83%)
Frame = -3
Query: 537 PYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLEHFVCSECSSDDDMKKPQATFHVSPGS 358
PYNPDDLMVQCEGCKDW+HP C+GMTIE+AKKL+ F+C++C+ ++ K+P ++ SP S
Sbjct: 1 PYNPDDLMVQCEGCKDWFHPTCMGMTIEQAKKLDTFLCADCAKENGAKRPSNSYPSSPSS 60
Query: 357 DIKVEPKRRK 328
D KVEPKRRK
Sbjct: 61 DSKVEPKRRK 70
>pir||S44281 ES43 protein - barley gi|1345528|emb|CAA54682.1| ES43 [Hordeum
vulgare]
Length = 227
Score = 111 bits (278), Expect = 6e-24
Identities = 47/90 (52%), Positives = 64/90 (70%), Gaps = 4/90 (4%)
Frame = -3
Query: 582 AFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLEHFVCSECSSD- 406
+F PDR+AV+CKCEMPYNPDDLM+QCE C DW+HPAC+G TI+EAKKLE+F C C ++
Sbjct: 138 SFVPDRIAVFCKCEMPYNPDDLMIQCEECSDWFHPACIGKTIKEAKKLENFTCEGCVAEN 197
Query: 405 ---DDMKKPQATFHVSPGSDIKVEPKRRKR 325
+ +K + + +V+ KRR+R
Sbjct: 198 GNANGVKNENSHESTGESDEKQVQSKRRRR 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 501,526,503
Number of Sequences: 1393205
Number of extensions: 10869256
Number of successful extensions: 27583
Number of sequences better than 10.0: 348
Number of HSP's better than 10.0 without gapping: 26038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27481
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
