KMC003753A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC003753A_C01 KMC003753A_c01
aattgtGATCTCCAATTAGTTCTTTGAAAATTTAAAGCGACGACAAAATAATCCTTCCAT
CCAATTTGATGTGACATCAATTCGAACCGTATTGATGATAAAAATATTTGAAGGATCAAA
TTGATGTTAGGTGTATCTTTAGATGACCCAGATGGTACTTTAGTCTATAGTTGAATATTT
ACATCTATGTACACAATATCATTGAGACTGCACTACTGAGTAGGTAGCAGACAACTCTCC
ACAAACATTGCCACGACAAAGAGGGCACACACCATGTATTTCCTTAAGCCACTTGTCAAC
ACACAACTTGTGGTACTCATGGTTGCAAGGAAGAACTCGTATTTGGTCCCCTTCTTCATA
CTCAGCCAGGCATATGTGACATTGTTCAGCATCATTGTCTCCATTAGCTGCATCGCCCTT
TTTGTGAGACTTCAGAGGGAAGGAGTCAACAATTGATTCAGGTGCGGGGAGTGAGACCAT
GGATAGGGAAAGTGATCCAGGT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003753A_C01 KMC003753A_c01
(502 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL47429.1| AT5g45290/K9E15_7 [Arabidopsis thaliana] 112 2e-24
ref|NP_199342.2| unknown protein; protein id: At5g45290.1, suppo... 112 2e-24
dbj|BAB10250.1| gene_id:K9E15.7~unknown protein [Arabidopsis tha... 91 6e-18
ref|NP_197262.1| RING-H2 zinc finger protein-like; protein id: A... 75 3e-13
ref|XP_215569.1| similar to RING finger protein 13 [Rattus norve... 71 6e-12
>gb|AAL47429.1| AT5g45290/K9E15_7 [Arabidopsis thaliana]
Length = 545
Score = 112 bits (280), Expect = 2e-24
Identities = 48/81 (59%), Positives = 59/81 (72%)
Frame = -2
Query: 483 SMVSLPAPESIVDSFPLKSHKKGDAANGDNDAEQCHICLAEYEEGDQIRVLPCNHEYHKL 304
S+ S+PAP +VD P+K + K + D QC+ICL EYEE D IR LPC+HE+HK
Sbjct: 460 SIGSVPAPNDVVDLLPIKLYTKSQS----EDPSQCYICLVEYEEADSIRALPCHHEFHKT 515
Query: 303 CVDKWLKEIHGVCPLCRGNVC 241
CVDKWLKEIH VCPLCRG++C
Sbjct: 516 CVDKWLKEIHRVCPLCRGDIC 536
>ref|NP_199342.2| unknown protein; protein id: At5g45290.1, supported by cDNA:
gi_17978923 [Arabidopsis thaliana]
Length = 545
Score = 112 bits (280), Expect = 2e-24
Identities = 48/81 (59%), Positives = 59/81 (72%)
Frame = -2
Query: 483 SMVSLPAPESIVDSFPLKSHKKGDAANGDNDAEQCHICLAEYEEGDQIRVLPCNHEYHKL 304
S+ S+PAP +VD P+K + K + D QC+ICL EYEE D IR LPC+HE+HK
Sbjct: 460 SIGSVPAPNDVVDLLPIKLYTKSQS----EDPSQCYICLVEYEEADSIRTLPCHHEFHKT 515
Query: 303 CVDKWLKEIHGVCPLCRGNVC 241
CVDKWLKEIH VCPLCRG++C
Sbjct: 516 CVDKWLKEIHRVCPLCRGDIC 536
>dbj|BAB10250.1| gene_id:K9E15.7~unknown protein [Arabidopsis thaliana]
Length = 546
Score = 91.3 bits (225), Expect = 6e-18
Identities = 40/70 (57%), Positives = 49/70 (69%)
Frame = -2
Query: 483 SMVSLPAPESIVDSFPLKSHKKGDAANGDNDAEQCHICLAEYEEGDQIRVLPCNHEYHKL 304
S+ S+PAP +VD P+K + K + D QC+ICL EYEE D IR LPC+HE+HK
Sbjct: 460 SIGSVPAPNDVVDLLPIKLYTKSQS----EDPSQCYICLVEYEEADSIRTLPCHHEFHKT 515
Query: 303 CVDKWLKEIH 274
CVDKWLKEIH
Sbjct: 516 CVDKWLKEIH 525
>ref|NP_197262.1| RING-H2 zinc finger protein-like; protein id: At5g17600.1
[Arabidopsis thaliana] gi|11358790|pir||T51464 RING-H2
zinc finger protein-like - Arabidopsis thaliana
gi|9755785|emb|CAC01904.1| RING-H2 zinc finger
protein-like [Arabidopsis thaliana]
Length = 362
Score = 75.5 bits (184), Expect = 3e-13
Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Frame = -2
Query: 459 ESIVDSFPLKSHKKGDAANGDNDAEQCHICLAEYEEGDQIRVLP-CNHEYHKLCVDKWLK 283
ES++ S + +K GD G D C +CL+E+EE + +R+LP CNH +H C+D WLK
Sbjct: 119 ESMIKSITVYKYKSGD---GFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 175
Query: 282 EIHGVCPLCRGNVCGELSATYSVVQS 205
H CPLCR V G + T SV Q+
Sbjct: 176 S-HSNCPLCRAFVTGVNNPTASVGQN 200
>ref|XP_215569.1| similar to RING finger protein 13 [Rattus norvegicus]
Length = 380
Score = 71.2 bits (173), Expect = 6e-12
Identities = 30/65 (46%), Positives = 41/65 (62%)
Frame = -2
Query: 438 PLKSHKKGDAANGDNDAEQCHICLAEYEEGDQIRVLPCNHEYHKLCVDKWLKEIHGVCPL 259
P+ KKGD + + C ICL EYE+GD++R+LPC+H YH CVD WL + CP+
Sbjct: 227 PVHKFKKGD------EYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 280
Query: 258 CRGNV 244
C+ V
Sbjct: 281 CKQKV 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,308,019
Number of Sequences: 1393205
Number of extensions: 9232285
Number of successful extensions: 23189
Number of sequences better than 10.0: 1090
Number of HSP's better than 10.0 without gapping: 22146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22838
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
SPD054a06_f |
BP048274 |
1 |
504 |
2 |
MPD065a03_f |
AV774303 |
7 |
505 |
3 |
MWM071e01_f |
AV765843 |
26 |
392 |
4 |
GNf068d09 |
BP072411 |
94 |
472 |
|
Lotus japonicus
Kazusa DNA Research Institute