KMC003753A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC003753A_C01 KMC003753A_c01
aattgtGATCTCCAATTAGTTCTTTGAAAATTTAAAGCGACGACAAAATAATCCTTCCAT
CCAATTTGATGTGACATCAATTCGAACCGTATTGATGATAAAAATATTTGAAGGATCAAA
TTGATGTTAGGTGTATCTTTAGATGACCCAGATGGTACTTTAGTCTATAGTTGAATATTT
ACATCTATGTACACAATATCATTGAGACTGCACTACTGAGTAGGTAGCAGACAACTCTCC
ACAAACATTGCCACGACAAAGAGGGCACACACCATGTATTTCCTTAAGCCACTTGTCAAC
ACACAACTTGTGGTACTCATGGTTGCAAGGAAGAACTCGTATTTGGTCCCCTTCTTCATA
CTCAGCCAGGCATATGTGACATTGTTCAGCATCATTGTCTCCATTAGCTGCATCGCCCTT
TTTGTGAGACTTCAGAGGGAAGGAGTCAACAATTGATTCAGGTGCGGGGAGTGAGACCAT
GGATAGGGAAAGTGATCCAGGT


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC003753A_C01 KMC003753A_c01
         (502 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL47429.1| AT5g45290/K9E15_7 [Arabidopsis thaliana]               112  2e-24
ref|NP_199342.2| unknown protein; protein id: At5g45290.1, suppo...   112  2e-24
dbj|BAB10250.1| gene_id:K9E15.7~unknown protein [Arabidopsis tha...    91  6e-18
ref|NP_197262.1| RING-H2 zinc finger protein-like; protein id: A...    75  3e-13
ref|XP_215569.1| similar to RING finger protein 13 [Rattus norve...    71  6e-12

>gb|AAL47429.1| AT5g45290/K9E15_7 [Arabidopsis thaliana]
          Length = 545

 Score =  112 bits (280), Expect = 2e-24
 Identities = 48/81 (59%), Positives = 59/81 (72%)
 Frame = -2

Query: 483 SMVSLPAPESIVDSFPLKSHKKGDAANGDNDAEQCHICLAEYEEGDQIRVLPCNHEYHKL 304
           S+ S+PAP  +VD  P+K + K  +     D  QC+ICL EYEE D IR LPC+HE+HK 
Sbjct: 460 SIGSVPAPNDVVDLLPIKLYTKSQS----EDPSQCYICLVEYEEADSIRALPCHHEFHKT 515

Query: 303 CVDKWLKEIHGVCPLCRGNVC 241
           CVDKWLKEIH VCPLCRG++C
Sbjct: 516 CVDKWLKEIHRVCPLCRGDIC 536

>ref|NP_199342.2| unknown protein; protein id: At5g45290.1, supported by cDNA:
           gi_17978923 [Arabidopsis thaliana]
          Length = 545

 Score =  112 bits (280), Expect = 2e-24
 Identities = 48/81 (59%), Positives = 59/81 (72%)
 Frame = -2

Query: 483 SMVSLPAPESIVDSFPLKSHKKGDAANGDNDAEQCHICLAEYEEGDQIRVLPCNHEYHKL 304
           S+ S+PAP  +VD  P+K + K  +     D  QC+ICL EYEE D IR LPC+HE+HK 
Sbjct: 460 SIGSVPAPNDVVDLLPIKLYTKSQS----EDPSQCYICLVEYEEADSIRTLPCHHEFHKT 515

Query: 303 CVDKWLKEIHGVCPLCRGNVC 241
           CVDKWLKEIH VCPLCRG++C
Sbjct: 516 CVDKWLKEIHRVCPLCRGDIC 536

>dbj|BAB10250.1| gene_id:K9E15.7~unknown protein [Arabidopsis thaliana]
          Length = 546

 Score = 91.3 bits (225), Expect = 6e-18
 Identities = 40/70 (57%), Positives = 49/70 (69%)
 Frame = -2

Query: 483 SMVSLPAPESIVDSFPLKSHKKGDAANGDNDAEQCHICLAEYEEGDQIRVLPCNHEYHKL 304
           S+ S+PAP  +VD  P+K + K  +     D  QC+ICL EYEE D IR LPC+HE+HK 
Sbjct: 460 SIGSVPAPNDVVDLLPIKLYTKSQS----EDPSQCYICLVEYEEADSIRTLPCHHEFHKT 515

Query: 303 CVDKWLKEIH 274
           CVDKWLKEIH
Sbjct: 516 CVDKWLKEIH 525

>ref|NP_197262.1| RING-H2 zinc finger protein-like; protein id: At5g17600.1
           [Arabidopsis thaliana] gi|11358790|pir||T51464 RING-H2
           zinc finger protein-like - Arabidopsis thaliana
           gi|9755785|emb|CAC01904.1| RING-H2 zinc finger
           protein-like [Arabidopsis thaliana]
          Length = 362

 Score = 75.5 bits (184), Expect = 3e-13
 Identities = 38/86 (44%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
 Frame = -2

Query: 459 ESIVDSFPLKSHKKGDAANGDNDAEQCHICLAEYEEGDQIRVLP-CNHEYHKLCVDKWLK 283
           ES++ S  +  +K GD   G  D   C +CL+E+EE + +R+LP CNH +H  C+D WLK
Sbjct: 119 ESMIKSITVYKYKSGD---GFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLK 175

Query: 282 EIHGVCPLCRGNVCGELSATYSVVQS 205
             H  CPLCR  V G  + T SV Q+
Sbjct: 176 S-HSNCPLCRAFVTGVNNPTASVGQN 200

>ref|XP_215569.1| similar to RING finger protein 13 [Rattus norvegicus]
          Length = 380

 Score = 71.2 bits (173), Expect = 6e-12
 Identities = 30/65 (46%), Positives = 41/65 (62%)
 Frame = -2

Query: 438 PLKSHKKGDAANGDNDAEQCHICLAEYEEGDQIRVLPCNHEYHKLCVDKWLKEIHGVCPL 259
           P+   KKGD      + + C ICL EYE+GD++R+LPC+H YH  CVD WL +    CP+
Sbjct: 227 PVHKFKKGD------EYDVCAICLEEYEDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPV 280

Query: 258 CRGNV 244
           C+  V
Sbjct: 281 CKQKV 285

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 432,308,019
Number of Sequences: 1393205
Number of extensions: 9232285
Number of successful extensions: 23189
Number of sequences better than 10.0: 1090
Number of HSP's better than 10.0 without gapping: 22146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22838
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPD054a06_f BP048274 1 504
2 MPD065a03_f AV774303 7 505
3 MWM071e01_f AV765843 26 392
4 GNf068d09 BP072411 94 472




Lotus japonicus
Kazusa DNA Research Institute