Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003752A_C01 KMC003752A_c01
(511 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194096.1| calcium-dependent protein kinase (CDPK6); prote... 54 1e-06
gb|AAK96512.1| AT4g23650/F9D16_120 [Arabidopsis thaliana] gi|173... 54 1e-06
emb|CAC44471.1| calcium dependent calmodulin independent protein... 49 3e-05
emb|CAC83060.1| calcium dependent calmodulin independent protein... 49 3e-05
dbj|BAB21081.1| putative calcium-dependent protein kinase [Oryza... 49 4e-05
>ref|NP_194096.1| calcium-dependent protein kinase (CDPK6); protein id: At4g23650.1,
supported by cDNA: 37278., supported by cDNA:
gi_14326513, supported by cDNA: gi_15450436, supported
by cDNA: gi_17386099, supported by cDNA: gi_19548042,
supported by cDNA: gi_836939 [Arabidopsis thaliana]
gi|7428013|pir||S71774 calcium-dependent protein kinase
(EC 2.7.1.-) 6 - Arabidopsis thaliana
gi|836940|gb|AAA67654.1| calcium-dependent protein
kinase [Arabidopsis thaliana] gi|836944|gb|AAA67656.1|
calcium-dependent protein kinase [Arabidopsis thaliana]
gi|4454034|emb|CAA23031.1| calcium-dependent protein
kinase (CDPK6) [Arabidopsis thaliana]
gi|7269213|emb|CAB79320.1| calcium-dependent protein
kinase (CDPK6) [Arabidopsis thaliana]
gi|14326514|gb|AAK60302.1|AF385710_1 AT4g23650/F9D16_120
[Arabidopsis thaliana] gi|19548043|gb|AAL87385.1|
AT4g23650/F9D16_120 [Arabidopsis thaliana]
gi|21593227|gb|AAM65176.1| calcium-dependent protein
kinase CDPK6 [Arabidopsis thaliana]
gi|23397190|gb|AAN31878.1| putative calcium-dependent
protein kinase (CDPK6) [Arabidopsis thaliana]
Length = 529
Score = 53.5 bits (127), Expect = 1e-06
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = -3
Query: 509 DTDNDGRINCEEFVAMMRKGNPELVTDRRR 420
DTD DG+IN EEFVAMM+KGNPELV +RRR
Sbjct: 499 DTDRDGKINYEEFVAMMKKGNPELVPNRRR 528
>gb|AAK96512.1| AT4g23650/F9D16_120 [Arabidopsis thaliana]
gi|17386100|gb|AAL38596.1|AF446863_1 AT4g23650/F9D16_120
[Arabidopsis thaliana]
Length = 529
Score = 53.5 bits (127), Expect = 1e-06
Identities = 24/30 (80%), Positives = 27/30 (90%)
Frame = -3
Query: 509 DTDNDGRINCEEFVAMMRKGNPELVTDRRR 420
DTD DG+IN EEFVAMM+KGNPELV +RRR
Sbjct: 499 DTDRDGKINYEEFVAMMKKGNPELVPNRRR 528
>emb|CAC44471.1| calcium dependent calmodulin independent protein kinase [Cucumis
sativus] gi|15011837|gb|AAK26164.2| calcium-dependent
calmodulin-independent protein kinase 5 [Cucumis
sativus]
Length = 514
Score = 49.3 bits (116), Expect = 3e-05
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = -3
Query: 509 DTDNDGRINCEEFVAMMRKGNPELVTDRRRK 417
DTDNDGRIN +E VAMMRKGN EL T R+K
Sbjct: 484 DTDNDGRINYDEVVAMMRKGNQELTTTSRQK 514
>emb|CAC83060.1| calcium dependent calmodulin independent protein kinase [Cucumis
sativus]
Length = 413
Score = 49.3 bits (116), Expect = 3e-05
Identities = 23/31 (74%), Positives = 25/31 (80%)
Frame = -3
Query: 509 DTDNDGRINCEEFVAMMRKGNPELVTDRRRK 417
DTDNDGRIN +E VAMMRKGN EL T R+K
Sbjct: 383 DTDNDGRINYDEVVAMMRKGNQELTTTSRQK 413
>dbj|BAB21081.1| putative calcium-dependent protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 518
Score = 48.5 bits (114), Expect = 4e-05
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = -3
Query: 509 DTDNDGRINCEEFVAMMRKGNPELVTDRRR 420
DTD+DGRIN +EFVAMMR NPE+ +RRR
Sbjct: 487 DTDHDGRINYQEFVAMMRNNNPEIAPNRRR 516
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,085,749
Number of Sequences: 1393205
Number of extensions: 8124551
Number of successful extensions: 16651
Number of sequences better than 10.0: 95
Number of HSP's better than 10.0 without gapping: 15833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16648
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
