Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003748A_C01 KMC003748A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194752.1| hypothetical protein; protein id: At4g30230.1 [... 63 2e-09
ref|NP_065570.1| putative immediate early protein [Alcelaphine h... 37 0.10
gb|ZP_00013895.1| hypothetical protein [Rhodospirillum rubrum] 35 0.50
emb|CAC80493.1| alpha-1,3-glucanase [Trichoderma harzianum] 35 0.50
sp|Q63801|T2D5_RAT Transcription initiation factor TFIID 70 kDa ... 35 0.66
>ref|NP_194752.1| hypothetical protein; protein id: At4g30230.1 [Arabidopsis
thaliana] gi|7486765|pir||T14083 hypothetical protein
F9N11.80 - Arabidopsis thaliana
gi|5730133|emb|CAB52467.1| hypothetical protein
[Arabidopsis thaliana] gi|7269923|emb|CAB81016.1|
hypothetical protein [Arabidopsis thaliana]
Length = 260
Score = 62.8 bits (151), Expect = 2e-09
Identities = 32/66 (48%), Positives = 39/66 (58%)
Frame = -1
Query: 509 FGAMKVPPEMELDDMKNRQVRRNPSTSMFPAADHGEKVAENRSSGKVSWRILKALSCKDH 330
FG +K PPE+EL D+K+RQ+RRN MFP+ + S SWR L ALSCK
Sbjct: 187 FGMVKFPPEIELKDIKSRQIRRNIPPVMFPSPANRRARGSRSPSPSPSWRFLNALSCKKP 246
Query: 329 RSVAVT 312
SVA T
Sbjct: 247 TSVAAT 252
>ref|NP_065570.1| putative immediate early protein [Alcelaphine herpesvirus 1]
gi|7441218|pir||T03166 probable immediate early protein
- alcelaphine herpesvirus 1 gi|2338034|gb|AAC58118.1|
putative immediate early protein [Alcelaphine
herpesvirus 1]
Length = 1300
Score = 37.4 bits (85), Expect = 0.10
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = -3
Query: 501 DEGPAGDGARRHEEPAGSPESVDVHVPGSRPR*EG------GGESELRQGIVENPEGTQL 340
+EG +G G+ E P+G S VP EG GG E G E P+GT+
Sbjct: 670 EEGSSGPGSSEGEGPSGPGSSEGQQVPKGAEGSEGEGPCRPGGPDE--DGDPEGPDGTEG 727
Query: 339 QGPSQRGGNDD 307
+GP GG D+
Sbjct: 728 EGPCGPGGPDE 738
Score = 34.3 bits (77), Expect = 0.86
Identities = 23/59 (38%), Positives = 31/59 (51%), Gaps = 1/59 (1%)
Frame = -3
Query: 504 GDEGPAGDGARRHEEPAG-SPESVDVHVPGSRPR*EGGGESELRQGIVENPEGTQLQGP 331
G EGP G+G E P G SP+ PG++ EG G + +G E PEG + +GP
Sbjct: 260 GPEGPEGEGPEGPEGPKGDSPDG-----PGAQEGPEGPGGPDEDEG-PEEPEGPEGEGP 312
Score = 33.9 bits (76), Expect = 1.1
Identities = 25/68 (36%), Positives = 32/68 (46%), Gaps = 2/68 (2%)
Frame = -3
Query: 504 GDEGPAGDGARRHEEPA--GSPESVDVHVPGSRPR*EGGGESELRQGIVENPEGTQLQGP 331
G EG G+G R P G PE D G P GG + + G E P+GT+ +GP
Sbjct: 698 GAEGSEGEGPCRPGGPDEDGDPEGPD-GTEGEGPCGPGGPDED---GDPEGPDGTEGEGP 753
Query: 330 SQRGGNDD 307
GG D+
Sbjct: 754 CGPGGPDE 761
Score = 31.6 bits (70), Expect = 5.5
Identities = 23/64 (35%), Positives = 29/64 (44%), Gaps = 1/64 (1%)
Frame = -3
Query: 504 GDEGPAGDGARRHEEPAGSPESVDVHVP-GSRPR*EGGGESELRQGIVENPEGTQLQGPS 328
G EGP G+G E P G + P G P +G G E+ +G + PEG GPS
Sbjct: 599 GPEGPEGEGPEGLEGPEGDEGPEEPEGPEGDSP--DGPGAQEVPEG-PKGPEGECQSGPS 655
Query: 327 QRGG 316
G
Sbjct: 656 SCEG 659
Score = 31.6 bits (70), Expect = 5.5
Identities = 26/78 (33%), Positives = 32/78 (40%), Gaps = 20/78 (25%)
Frame = -3
Query: 504 GDEGPAGDGARRHEEPAG------------------SPESVDVHVPGSRPR*EG--GGES 385
G EGP G+G R E P G PE PG++ EG G E
Sbjct: 462 GPEGPEGEGPERPEGPEGEGPEGPEGPEGEGPEGPEGPERDSPDGPGAQEGPEGPEGPEG 521
Query: 384 ELRQGIVENPEGTQLQGP 331
E +G+ E PEG +GP
Sbjct: 522 EGPEGL-EGPEGEGPEGP 538
Score = 31.2 bits (69), Expect = 7.2
Identities = 22/65 (33%), Positives = 29/65 (43%), Gaps = 7/65 (10%)
Frame = -3
Query: 504 GDEGPAGDGARRHEEPAG-------SPESVDVHVPGSRPR*EGGGESELRQGIVENPEGT 346
G EGP G+G E P G PE P ++ EG G + +G E PEG
Sbjct: 311 GPEGPEGEGPEGLEGPEGEGPEGPEGPEGDSPDGPDAQEGPEGPGGPDEDEG-PEEPEGP 369
Query: 345 QLQGP 331
+ +GP
Sbjct: 370 EGEGP 374
Score = 30.8 bits (68), Expect = 9.5
Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Frame = -3
Query: 504 GDEGPAGDGARRHEEPAG-------SPESVDVHVPGSRPR*EGGGESELRQGIVENPEGT 346
G EGP G+G E P G PE PG++ EG E +G E PEG
Sbjct: 206 GPEGPEGEGPEGLEGPKGEGPEGPEGPEGDSPDGPGAQEGPEGLEGPEGDEG-PEGPEGP 264
Query: 345 QLQGP 331
+ +GP
Sbjct: 265 EGEGP 269
>gb|ZP_00013895.1| hypothetical protein [Rhodospirillum rubrum]
Length = 270
Score = 35.0 bits (79), Expect = 0.50
Identities = 16/35 (45%), Positives = 20/35 (56%)
Frame = -3
Query: 459 PAGSPESVDVHVPGSRPR*EGGGESELRQGIVENP 355
PA P S+DVH P PR G SE+ G+ E+P
Sbjct: 52 PADDPPSIDVHAPDPVPRRHGRRLSEILTGLAEDP 86
>emb|CAC80493.1| alpha-1,3-glucanase [Trichoderma harzianum]
Length = 635
Score = 35.0 bits (79), Expect = 0.50
Identities = 26/78 (33%), Positives = 36/78 (45%)
Frame = +2
Query: 272 LRVTTLEA*QTTSSLPPRCDGPCS*VPSGFSTIPCRSSDSPPPSHRGLLPGTWTSTDSGE 451
L VTT +A + + PP GP S +P+ +T R+S PP S + +S
Sbjct: 479 LHVTTCQAKPSLGTNPPVTSGPVSSLPASSTT---RASSPPPVSSTRV-----SSPPVSS 530
Query: 452 PAGSSCRRAPSPAGPSSP 505
P S AP P G S+P
Sbjct: 531 PPVSRTSSAPPPPGNSTP 548
>sp|Q63801|T2D5_RAT Transcription initiation factor TFIID 70 kDa subunit (TAFII-70)
(TAFII-80) (TAFII80) (p80) gi|1109650|dbj|BAA08435.1|
TFIID subunit p80 [Rattus sp.]
Length = 678
Score = 34.7 bits (78), Expect = 0.66
Identities = 26/67 (38%), Positives = 30/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 311 SLPPRCDGPCS*VPSGFSTIPCRSSDSPPPSHRGLLPGTWTSTDSGEPA-GSSCRRAPSP 487
SLPP +G PS S +P SS P L G + DS PA G+ P
Sbjct: 610 SLPPTGEGKGG-PPSHPSPVPPSSSSPSPLGGSALCGGKQETGDSPPPAPGTPKANGSQP 668
Query: 488 AGPSSPQ 508
GPSSPQ
Sbjct: 669 TGPSSPQ 675
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,381,428
Number of Sequences: 1393205
Number of extensions: 10741787
Number of successful extensions: 40596
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 36034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40339
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
