Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003744A_C01 KMC003744A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86894.1| syringolide-induced protein B13-1-9 [Glycine max] 113 2e-24
ref|NP_196250.1| harpin-induced protein-like; protein id: At5g06... 68 9e-11
gb|AAK44147.2|AF370332_1 putative harpin-induced protein [Arabid... 68 9e-11
gb|AAF88023.1|AF264699_1 NDR1/HIN1-like protein 3 [Arabidopsis t... 68 9e-11
ref|NP_181142.1| similar to harpin-induced protein hin1 from tob... 59 3e-08
>dbj|BAB86894.1| syringolide-induced protein B13-1-9 [Glycine max]
Length = 203
Score = 113 bits (282), Expect = 2e-24
Identities = 61/119 (51%), Positives = 78/119 (65%)
Frame = -2
Query: 558 VEAVAFYDGIPFGSTDVITWRNSFRQYKKSTARMSGVLIGEHAVVLARDQVVDFERDMRD 379
VEA+AFY+ F + DVIT NSFRQYKKST+ MS V G+ ++L +QV +D D
Sbjct: 89 VEALAFYEDARFANYDVITHMNSFRQYKKSTSPMSAVFSGKKVLMLNSEQVSKLNQDKSD 148
Query: 378 SVFDIDVKLHIRMRFRLGDSIGGTTKVKVKCELEVPFSSNNHGKSVTHVFLPTECDVNF 202
V+DI VKL+ R+RFRLGDSI G K KVKC L+VPFS + +F T+C V+F
Sbjct: 149 GVYDIYVKLNFRIRFRLGDSISGNLKPKVKCHLKVPFSKS----GTFTLFETTKCSVHF 203
>ref|NP_196250.1| harpin-induced protein-like; protein id: At5g06320.1, supported by
cDNA: gi_9502175 [Arabidopsis thaliana]
gi|9758412|dbj|BAB08954.1| harpin-induced protein-like
[Arabidopsis thaliana] gi|24030178|gb|AAN41271.1|
putative harpin-induced protein [Arabidopsis thaliana]
Length = 231
Score = 67.8 bits (164), Expect = 9e-11
Identities = 39/119 (32%), Positives = 65/119 (53%)
Frame = -2
Query: 558 VEAVAFYDGIPFGSTDVITWRNSFRQYKKSTARMSGVLIGEHAVVLARDQVVDFERDMRD 379
+E +Y FG ++ I+ F Q K+T + L+G+ V+L + D D+
Sbjct: 119 IEVRGYYGDQRFGMSNNIS---KFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNS 175
Query: 378 SVFDIDVKLHIRMRFRLGDSIGGTTKVKVKCELEVPFSSNNHGKSVTHVFLPTECDVNF 202
++ ID KL +++RF+ G K K+KC+L+VP +SN+ + VF PT+CDV+F
Sbjct: 176 QIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNS---TSGFVFQPTKCDVDF 231
>gb|AAK44147.2|AF370332_1 putative harpin-induced protein [Arabidopsis thaliana]
Length = 223
Score = 67.8 bits (164), Expect = 9e-11
Identities = 39/119 (32%), Positives = 65/119 (53%)
Frame = -2
Query: 558 VEAVAFYDGIPFGSTDVITWRNSFRQYKKSTARMSGVLIGEHAVVLARDQVVDFERDMRD 379
+E +Y FG ++ I+ F Q K+T + L+G+ V+L + D D+
Sbjct: 111 IEVRGYYGDQRFGMSNNIS---KFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNS 167
Query: 378 SVFDIDVKLHIRMRFRLGDSIGGTTKVKVKCELEVPFSSNNHGKSVTHVFLPTECDVNF 202
++ ID KL +++RF+ G K K+KC+L+VP +SN+ + VF PT+CDV+F
Sbjct: 168 QIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNS---TSGFVFQPTKCDVDF 223
>gb|AAF88023.1|AF264699_1 NDR1/HIN1-like protein 3 [Arabidopsis thaliana]
gi|24417302|gb|AAN60261.1| unknown [Arabidopsis
thaliana]
Length = 230
Score = 67.8 bits (164), Expect = 9e-11
Identities = 39/119 (32%), Positives = 65/119 (53%)
Frame = -2
Query: 558 VEAVAFYDGIPFGSTDVITWRNSFRQYKKSTARMSGVLIGEHAVVLARDQVVDFERDMRD 379
+E +Y FG ++ I+ F Q K+T + L+G+ V+L + D D+
Sbjct: 118 IEVRGYYGDQRFGMSNNIS---KFYQGHKNTTVVGTKLVGQQLVLLDGGERKDLNEDVNS 174
Query: 378 SVFDIDVKLHIRMRFRLGDSIGGTTKVKVKCELEVPFSSNNHGKSVTHVFLPTECDVNF 202
++ ID KL +++RF+ G K K+KC+L+VP +SN+ + VF PT+CDV+F
Sbjct: 175 QIYRIDAKLRLKIRFKFGLIKSWRFKPKIKCDLKVPLTSNS---TSGFVFQPTKCDVDF 230
>ref|NP_181142.1| similar to harpin-induced protein hin1 from tobacco; protein id:
At2g35980.1, supported by cDNA: 26418., supported by
cDNA: gi_13122295 [Arabidopsis thaliana]
gi|25354698|pir||D84775 hypothetical protein At2g35980
[imported] - Arabidopsis thaliana
gi|4510371|gb|AAD21459.1| similar to harpin-induced
protein hin1 from tobacco [Arabidopsis thaliana]
gi|13122296|dbj|BAB32889.1| hin1 homolog [Arabidopsis
thaliana] gi|21554788|gb|AAM63691.1| similar to
harpin-induced protein hin1 from tobacco [Arabidopsis
thaliana] gi|27754489|gb|AAO22692.1| putative
harpin-induced protein hin1 [Arabidopsis thaliana]
gi|28393973|gb|AAO42394.1| putative harpin-induced
protein hin1 [Arabidopsis thaliana]
Length = 227
Score = 59.3 bits (142), Expect = 3e-08
Identities = 39/120 (32%), Positives = 64/120 (52%), Gaps = 1/120 (0%)
Frame = -2
Query: 558 VEAVAFYDGIPFGSTDVITWRNSFRQYKKSTARMSGVLIGEHAVVLARDQVVDFERDMRD 379
+EA A+Y+G F ST +T F Q K+T ++ G++ V+ Q +
Sbjct: 113 IEAHAYYEGKRF-STITLT---PFYQGHKNTTVLTPTFQGQNLVIFNAGQSRTLNAERIS 168
Query: 378 SVFDIDVKLHIRMRFRLGDSIGGTTKVKVKC-ELEVPFSSNNHGKSVTHVFLPTECDVNF 202
V++I++K +R+RF+LGD K KV C +L +P S++N G + T P +CD +F
Sbjct: 169 GVYNIEIKFRLRVRFKLGDLKFRRIKPKVDCDDLRLPLSTSN-GTTTTSTVFPIKCDFDF 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 475,649,729
Number of Sequences: 1393205
Number of extensions: 10195312
Number of successful extensions: 32786
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 30281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32679
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
