Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003736A_C01 KMC003736A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564103.1| expressed protein; protein id: At1g20110.1, sup... 100 2e-20
emb|CAA61964.1| unknown [Phoenix dactylifera] 99 4e-20
pir||H86334 T20H2.10 protein - Arabidopsis thaliana gi|8778986|g... 97 8e-20
gb|AAD10234.1| unknown [Triticum aestivum] 94 1e-18
gb|AAD39842.1| HSPC026 [Homo sapiens] 32 3.3
>ref|NP_564103.1| expressed protein; protein id: At1g20110.1, supported by cDNA:
gi_13605832, supported by cDNA: gi_16226227 [Arabidopsis
thaliana] gi|13605833|gb|AAK32902.1|AF367315_1
At1g20110/T20H2_10 [Arabidopsis thaliana]
gi|16226228|gb|AAL16109.1|AF428277_1 At1g20110/T20H2_10
[Arabidopsis thaliana] gi|23506043|gb|AAN28881.1|
At1g20110/T20H2_10 [Arabidopsis thaliana]
Length = 601
Score = 99.8 bits (247), Expect = 2e-20
Identities = 46/57 (80%), Positives = 51/57 (88%)
Frame = -1
Query: 517 LERNRKSSGSKSDGSGRRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSSY 347
+ERNRKSS +GSGRRMKEVACP CTVHLQVQVP SGSETIECGVCQ+PFLVS++
Sbjct: 545 MERNRKSSSGLREGSGRRMKEVACPTCTVHLQVQVPVSGSETIECGVCQNPFLVSAH 601
>emb|CAA61964.1| unknown [Phoenix dactylifera]
Length = 366
Score = 98.6 bits (244), Expect = 4e-20
Identities = 49/58 (84%), Positives = 55/58 (94%), Gaps = 2/58 (3%)
Frame = -1
Query: 517 LERNRKS-SGSKS-DGSGRRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSS 350
+E+NRKS SGSKS DGSGRRM+EVACP CTVHLQVQVP+SGSETIECGVCQ+PFLVS+
Sbjct: 308 MEKNRKSPSGSKSSDGSGRRMREVACPTCTVHLQVQVPASGSETIECGVCQNPFLVSA 365
>pir||H86334 T20H2.10 protein - Arabidopsis thaliana
gi|8778986|gb|AAF79901.1|AC022472_10 Contains similarity
to an unknown mRNA from Triticum sativum gb|AF004816 and
contains a Lipase/Acylhydrolase with GDSL-like motif
PF|00657 and FYVE zinc finger PF|01363 domain. ESTs
gb|AV541158, gb|AA394699, gb|AI993442, gb|T88167,
gb|BE038227, gb|AI993489, gb|T88521 come from this gene.
[Arabidopsis thaliana]
Length = 967
Score = 97.4 bits (241), Expect = 8e-20
Identities = 45/56 (80%), Positives = 49/56 (87%)
Frame = -1
Query: 517 LERNRKSSGSKSDGSGRRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSS 350
+ERNRKSS +GSGRRMKEVACP CTVHLQVQVP SGSETIECGVCQ+PFLV +
Sbjct: 545 MERNRKSSSGLREGSGRRMKEVACPTCTVHLQVQVPVSGSETIECGVCQNPFLVQT 600
>gb|AAD10234.1| unknown [Triticum aestivum]
Length = 502
Score = 93.6 bits (231), Expect = 1e-18
Identities = 45/57 (78%), Positives = 50/57 (86%), Gaps = 1/57 (1%)
Frame = -1
Query: 517 LERNRKSSGSKSDG-SGRRMKEVACPICTVHLQVQVPSSGSETIECGVCQHPFLVSS 350
LERNRKSSG+ S G SG RM+EVACP CTVHLQV+VP SGSET+ECGVCQH FLVS+
Sbjct: 445 LERNRKSSGTASGGASGTRMREVACPTCTVHLQVEVPISGSETVECGVCQHAFLVSA 501
>gb|AAD39842.1| HSPC026 [Homo sapiens]
Length = 275
Score = 32.3 bits (72), Expect = 3.3
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 472 GRRMKEVACPICTVHLQVQVPSSGSE-TIECGVCQHPFLVSSY*ALINPDDRCLY 311
G++++ CP+ VH P +G E + CGVC+ P L + + + + CL+
Sbjct: 218 GKQLEGTECPLHVVH-----PPTGEEFALGCGVCEMPTLFRTRRSFVYREKNCLH 267
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 412,058,794
Number of Sequences: 1393205
Number of extensions: 8395673
Number of successful extensions: 18537
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 18139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18521
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
