Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003735A_C01 KMC003735A_c01
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181288.1| unknown protein; protein id: At2g37520.1 [Arabi... 138 6e-32
ref|NP_180365.1| hypothetical protein; protein id: At2g27980.1 [... 138 6e-32
ref|NP_190936.1| putative protein; protein id: At3g53680.1 [Arab... 135 4e-31
ref|NP_181210.2| putative PHD-type zinc finger protein; protein ... 124 2e-27
pir||H84783 probable PHD-type zinc finger protein [imported] - A... 124 2e-27
>ref|NP_181288.1| unknown protein; protein id: At2g37520.1 [Arabidopsis thaliana]
gi|7485433|pir||T02518 hypothetical protein At2g37520
[imported] - Arabidopsis thaliana
gi|3236235|gb|AAC23623.1| unknown protein [Arabidopsis
thaliana] gi|20197471|gb|AAM15090.1| unknown protein
[Arabidopsis thaliana]
Length = 825
Score = 138 bits (348), Expect = 6e-32
Identities = 59/122 (48%), Positives = 88/122 (71%)
Frame = -2
Query: 678 KKVKDHDFRGMYCAVLTINPMVVCACLFRVFGQEVAELPLLATRKDYQRKGYFRSLFSCI 499
+ + +F GMYC VL +N +VV A L R+FGQEVAELP++AT ++YQ +GYF+ L++C+
Sbjct: 692 RNISGQEFGGMYCLVLIVNSLVVSAALLRIFGQEVAELPIVATSREYQGRGYFQGLYACV 751
Query: 498 ERMLGCLKVKNFVLPATREAKSLWTTKFGFSRLGREKINNYQKYNNIMAFKGTLFLQKPI 319
E +L L V+N VLPA EA+S+WT KFGF+++ +++ YQK + FKGT L+K +
Sbjct: 752 ENLLSSLNVENLVLPAAEEAESIWTKKFGFTKMSDQQLQEYQKEVQLTIFKGTSMLEKKV 811
Query: 318 PQ 313
P+
Sbjct: 812 PK 813
>ref|NP_180365.1| hypothetical protein; protein id: At2g27980.1 [Arabidopsis thaliana]
gi|25407937|pir||C84679 hypothetical protein At2g27980
[imported] - Arabidopsis thaliana
gi|4510418|gb|AAD21504.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1008
Score = 138 bits (348), Expect = 6e-32
Identities = 63/121 (52%), Positives = 89/121 (73%)
Frame = -2
Query: 678 KKVKDHDFRGMYCAVLTINPMVVCACLFRVFGQEVAELPLLATRKDYQRKGYFRSLFSCI 499
++ K DF GMYC +L ++ ++V +FRVFG E+AELPL+AT KD Q +GYF+ LF+CI
Sbjct: 874 RQTKAQDFSGMYCTMLAVDEVIVSVGIFRVFGSELAELPLVATSKDCQGQGYFQCLFACI 933
Query: 498 ERMLGCLKVKNFVLPATREAKSLWTTKFGFSRLGREKINNYQKYNNIMAFKGTLFLQKPI 319
ER+LG L VK+ VLPA EAKS+WT KFGF+++ E++ Y+K ++M F GT L+K +
Sbjct: 934 ERLLGFLNVKHIVLPAADEAKSIWTDKFGFTKMTDEEVKEYRKDYSVMIFHGTSMLRKSV 993
Query: 318 P 316
P
Sbjct: 994 P 994
>ref|NP_190936.1| putative protein; protein id: At3g53680.1 [Arabidopsis thaliana]
gi|11282417|pir||T45908 hypothetical protein F4P12.380 -
Arabidopsis thaliana gi|6729519|emb|CAB67675.1| putative
protein [Arabidopsis thaliana]
Length = 839
Score = 135 bits (341), Expect = 4e-31
Identities = 57/125 (45%), Positives = 87/125 (69%)
Frame = -2
Query: 678 KKVKDHDFRGMYCAVLTINPMVVCACLFRVFGQEVAELPLLATRKDYQRKGYFRSLFSCI 499
+ + +F GMYC VL +N +VV A L R+FGQ+VAELP++AT ++YQ +GYF+ LF+C+
Sbjct: 710 RNISGQEFGGMYCLVLMVNSLVVSAALLRIFGQKVAELPIVATSREYQGRGYFQGLFACV 769
Query: 498 ERMLGCLKVKNFVLPATREAKSLWTTKFGFSRLGREKINNYQKYNNIMAFKGTLFLQKPI 319
E +L L V+N +LPA EA+S+WT KFGF+++ ++ YQ+ + FKGT L+K +
Sbjct: 770 ENLLSSLNVENLLLPAAEEAESIWTNKFGFTKMTEHRLQRYQREVQLTIFKGTSMLEKKV 829
Query: 318 PQLQK 304
P +
Sbjct: 830 PSFSE 834
>ref|NP_181210.2| putative PHD-type zinc finger protein; protein id: At2g36720.1,
supported by cDNA: gi_20260433 [Arabidopsis thaliana]
gi|20260434|gb|AAM13115.1| putative PHD-type zinc finger
protein [Arabidopsis thaliana]
Length = 1007
Score = 124 bits (310), Expect = 2e-27
Identities = 64/129 (49%), Positives = 87/129 (66%), Gaps = 1/129 (0%)
Frame = -2
Query: 678 KKVKDHDFRGMYCAVLTINPMVVCACLFRVFGQEVAELPLLATRKDYQRKGYFRSLFSCI 499
K ++ D+ G+ CAVLT+N VV A L RVFG+EVAELPL+ATR + KGYF+ LFSCI
Sbjct: 853 KTMQGQDYGGICCAVLTVNATVVSAGLLRVFGREVAELPLVATRMCSREKGYFQLLFSCI 912
Query: 498 ERMLGCLKVKNFVLPATREAKSLWTTKFGFSRLGREKINNYQKY-NNIMAFKGTLFLQKP 322
E++L L V++ V+PA EA+ LW KFGF +L E+++ Y K ++ FKG LQKP
Sbjct: 913 EKLLSSLNVESIVVPAAEEAEPLWMNKFGFRKLAPEQLSKYIKICYQMVRFKGASMLQKP 972
Query: 321 IPQLQKIQQ 295
+ Q I +
Sbjct: 973 VDSHQIIDK 981
>pir||H84783 probable PHD-type zinc finger protein [imported] - Arabidopsis
thaliana gi|4415917|gb|AAD20148.1| putative PHD-type zinc
finger protein [Arabidopsis thaliana]
Length = 958
Score = 124 bits (310), Expect = 2e-27
Identities = 64/129 (49%), Positives = 87/129 (66%), Gaps = 1/129 (0%)
Frame = -2
Query: 678 KKVKDHDFRGMYCAVLTINPMVVCACLFRVFGQEVAELPLLATRKDYQRKGYFRSLFSCI 499
K ++ D+ G+ CAVLT+N VV A L RVFG+EVAELPL+ATR + KGYF+ LFSCI
Sbjct: 804 KTMQGQDYGGICCAVLTVNATVVSAGLLRVFGREVAELPLVATRMCSREKGYFQLLFSCI 863
Query: 498 ERMLGCLKVKNFVLPATREAKSLWTTKFGFSRLGREKINNYQKY-NNIMAFKGTLFLQKP 322
E++L L V++ V+PA EA+ LW KFGF +L E+++ Y K ++ FKG LQKP
Sbjct: 864 EKLLSSLNVESIVVPAAEEAEPLWMNKFGFRKLAPEQLSKYIKICYQMVRFKGASMLQKP 923
Query: 321 IPQLQKIQQ 295
+ Q I +
Sbjct: 924 VDSHQIIDK 932
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,674,857
Number of Sequences: 1393205
Number of extensions: 11300948
Number of successful extensions: 24391
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24384
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
