Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003732A_C01 KMC003732A_c01
(439 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00065541.1| hypothetical protein [Microbulbifer degradans... 30 5.2
ref|NP_187166.1| putative sugar transporter; protein id: At3g051... 30 5.2
gb|EAA33064.1| hypothetical protein [Neurospora crassa] 30 5.2
ref|NP_635484.1| conserved hypothetical protein [Xanthomonas cam... 30 5.2
ref|XP_156155.1| hypothetical protein XP_156155 [Mus musculus] 30 6.8
>ref|ZP_00065541.1| hypothetical protein [Microbulbifer degradans 2-40]
Length = 516
Score = 30.4 bits (67), Expect = 5.2
Identities = 12/27 (44%), Positives = 19/27 (69%), Gaps = 1/27 (3%)
Frame = +1
Query: 154 TANPQVMVRNWTSKWL-FPHGITFLVS 231
T Q+M++NW+S+WL PH TF ++
Sbjct: 52 TQRVQLMIKNWSSRWLELPHKQTFALA 78
>ref|NP_187166.1| putative sugar transporter; protein id: At3g05150.1 [Arabidopsis
thaliana] gi|6729025|gb|AAF27021.1|AC009177_11 putative
sugar transporter [Arabidopsis thaliana]
Length = 463
Score = 30.4 bits (67), Expect = 5.2
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +1
Query: 112 VISSVLFPTI*LEATANPQVMVRNWTSKWLFPHGITFLV 228
VI S +FP I L+ TA V V NW S WL FL+
Sbjct: 384 VIMSEIFP-INLKGTAGGLVTVVNWLSSWLVSFTFNFLM 421
>gb|EAA33064.1| hypothetical protein [Neurospora crassa]
Length = 694
Score = 30.4 bits (67), Expect = 5.2
Identities = 20/67 (29%), Positives = 32/67 (46%), Gaps = 1/67 (1%)
Frame = +3
Query: 219 LSGISWTIYQAIGNSTSQNYQL-QGCTVHGQKTWAPTISTINSSSTNDTSIAIHIAILGQ 395
L+ I+WTI I S +N + + G++ W TIS I + + D +A + L
Sbjct: 451 LNNIAWTI-SCIDFSDGENANIWKAWAPAGKRIWQRTISPILEADSADLQLATQVTSLAW 509
Query: 396 RILGSLN 416
+ SLN
Sbjct: 510 AVARSLN 516
>ref|NP_635484.1| conserved hypothetical protein [Xanthomonas campestris pv.
campestris str. ATCC 33913] gi|21111036|gb|AAM39408.1|
conserved hypothetical protein [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 393
Score = 30.4 bits (67), Expect = 5.2
Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 1/93 (1%)
Frame = +1
Query: 145 LEATANPQVMVRNWTSKWLFPHGITFLVSVGLFTRP*ETLHPKTTSSRAVLYTGKKHGHQ 324
L+A A + V W + L P + L+ TR E L P+ T RAV +
Sbjct: 296 LDAAALGRGQVLRWAAP-LQPQPLPVLLDADFPTRLQEALQPRPTPQRAVAQAVRPLRGP 354
Query: 325 LYQLSTVHQPMIP-ALQFILLY*VKESWAVSTP 420
+LS QP+ P + +LL E W + P
Sbjct: 355 AIRLSIDPQPLAPWLIGLVLLLFGIERWLATGP 387
>ref|XP_156155.1| hypothetical protein XP_156155 [Mus musculus]
Length = 131
Score = 30.0 bits (66), Expect = 6.8
Identities = 12/35 (34%), Positives = 21/35 (59%)
Frame = -3
Query: 209 CGNNHLLVQFLTITCGLAVASNYIVGNSTELMTRL 105
C NH ++ F + VA+NYI+G + +L++ L
Sbjct: 82 CARNHPVMTFCRSRNSVPVATNYIIGQTVQLISAL 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 390,656,633
Number of Sequences: 1393205
Number of extensions: 8005591
Number of successful extensions: 16454
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16448
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
