Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003731A_C01 KMC003731A_c01
(430 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566339.1| putative SCO1 protein; protein id: At3g08950.1,... 119 7e-27
gb|AAF07830.1|AC010871_6 putative SCO1 protein [Arabidopsis thal... 119 7e-27
ref|NP_004580.1| cytochrome oxidase deficient homolog 1 [Homo sa... 72 1e-12
gb|AAD20051.1| h-sco1 [Homo sapiens] 72 1e-12
ref|NP_608884.1| CG8885-PA [Drosophila melanogaster] gi|7296911|... 66 9e-11
>ref|NP_566339.1| putative SCO1 protein; protein id: At3g08950.1, supported by cDNA:
142032., supported by cDNA: gi_17979326, supported by
cDNA: gi_20465762 [Arabidopsis thaliana]
gi|17979327|gb|AAL49889.1| putative SCO1 protein
[Arabidopsis thaliana] gi|20465763|gb|AAM20370.1|
putative SCO1 protein [Arabidopsis thaliana]
gi|21553398|gb|AAM62491.1| putative SCO1 protein
[Arabidopsis thaliana]
Length = 334
Score = 119 bits (299), Expect = 7e-27
Identities = 54/70 (77%), Positives = 65/70 (92%)
Frame = -3
Query: 428 TGSSDEIKSVARAYRVYYMKTAEEDSDYLVDHSIVMYLMGPDMNYVKFFGQHNDADSLAD 249
TGS +EIKSVAR+YRVYYMKT EEDSDYLVDHSIVMYLM P+MN+VKF+G+++D DSL D
Sbjct: 264 TGSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVMYLMSPEMNFVKFYGKNHDVDSLTD 323
Query: 248 GIVKEIKQYK 219
G+VKEI+QY+
Sbjct: 324 GVVKEIRQYR 333
>gb|AAF07830.1|AC010871_6 putative SCO1 protein [Arabidopsis thaliana]
Length = 273
Score = 119 bits (299), Expect = 7e-27
Identities = 54/70 (77%), Positives = 65/70 (92%)
Frame = -3
Query: 428 TGSSDEIKSVARAYRVYYMKTAEEDSDYLVDHSIVMYLMGPDMNYVKFFGQHNDADSLAD 249
TGS +EIKSVAR+YRVYYMKT EEDSDYLVDHSIVMYLM P+MN+VKF+G+++D DSL D
Sbjct: 203 TGSPEEIKSVARSYRVYYMKTEEEDSDYLVDHSIVMYLMSPEMNFVKFYGKNHDVDSLTD 262
Query: 248 GIVKEIKQYK 219
G+VKEI+QY+
Sbjct: 263 GVVKEIRQYR 272
>ref|NP_004580.1| cytochrome oxidase deficient homolog 1 [Homo sapiens]
gi|8134663|sp|O75880|SCO1_HUMAN SCO1 protein homolog,
mitochondrial precursor gi|3599966|gb|AAD08641.1| h-sco1
[Homo sapiens] gi|9963787|gb|AAG09693.1|AF183424_1
SCO1/2 protein [Homo sapiens] gi|10834819|gb|AAG23836.1|
cytochrome oxidase deficient in yeast homolog 1 [Homo
sapiens] gi|15930128|gb|AAH15504.1|AAH15504 SCO
(cytochrome oxidase deficient, yeast) homolog 1 [Homo
sapiens]
Length = 301
Score = 72.4 bits (176), Expect = 1e-12
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Frame = -3
Query: 428 TGSSDEIKSVARAYRVYYMK-TAEEDSDYLVDHSIVMYLMGPDMNYVKFFGQHNDADSLA 252
TG+ +E+ VARAYRVYY +ED DY+VDH+I+MYL+GPD ++ +FGQ+ +A
Sbjct: 228 TGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIA 287
Query: 251 DGIVKEIKQYK 219
I ++ Y+
Sbjct: 288 ASIATHMRPYR 298
>gb|AAD20051.1| h-sco1 [Homo sapiens]
Length = 190
Score = 72.4 bits (176), Expect = 1e-12
Identities = 32/71 (45%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Frame = -3
Query: 428 TGSSDEIKSVARAYRVYYMK-TAEEDSDYLVDHSIVMYLMGPDMNYVKFFGQHNDADSLA 252
TG+ +E+ VARAYRVYY +ED DY+VDH+I+MYL+GPD ++ +FGQ+ +A
Sbjct: 117 TGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNKRKGEIA 176
Query: 251 DGIVKEIKQYK 219
I ++ Y+
Sbjct: 177 ASIATHMRPYR 187
>ref|NP_608884.1| CG8885-PA [Drosophila melanogaster] gi|7296911|gb|AAF52184.1|
CG8885-PA [Drosophila melanogaster]
gi|19527985|gb|AAL90107.1| AT19154p [Drosophila
melanogaster]
Length = 251
Score = 66.2 bits (160), Expect = 9e-11
Identities = 28/72 (38%), Positives = 49/72 (67%), Gaps = 1/72 (1%)
Frame = -3
Query: 428 TGSSDEIKSVARAYRVYYMK-TAEEDSDYLVDHSIVMYLMGPDMNYVKFFGQHNDADSLA 252
TG+ ++I+ V +A+RVY+ +ED+DY+VDH+I+MYL+ PD +V ++GQ+ D D
Sbjct: 172 TGTVEQIRKVCKAFRVYFSAGPRDEDNDYIVDHTIIMYLVNPDGEFVDYYGQNRDKDQCV 231
Query: 251 DGIVKEIKQYKN 216
I+ I ++ +
Sbjct: 232 ASILVNIAKWNS 243
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 302,492,075
Number of Sequences: 1393205
Number of extensions: 5522108
Number of successful extensions: 10912
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 10690
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10880
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 6822985368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
