Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003720A_C01 KMC003720A_c01
(420 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO32062.1| mitochondrial basic amino acid carrier [Arabidops... 40 0.005
ref|NP_180938.1| mitochondrial carrier protein family; protein i... 40 0.005
pir||T18220 chitin synthase (EC 2.4.1.16) CHS1 - yeast (Candida ... 33 0.83
dbj|BAA07738.1| chitin synthase I [Candida albicans] 33 0.83
sp|P49965|SR72_SCHMA SIGNAL RECOGNITION PARTICLE 72 KD PROTEIN (... 32 2.4
>gb|AAO32062.1| mitochondrial basic amino acid carrier [Arabidopsis thaliana]
Length = 311
Score = 40.4 bits (93), Expect = 0.005
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = -1
Query: 420 AFPANAATIVTWELALKMLGIKHE 349
AFPANAA IV WE ++KMLGIK +
Sbjct: 288 AFPANAAAIVAWEFSMKMLGIKRD 311
>ref|NP_180938.1| mitochondrial carrier protein family; protein id: At2g33820.1
[Arabidopsis thaliana] gi|25408315|pir||A84750 probable
mitochondrial carrier protein [imported] - Arabidopsis
thaliana gi|1707010|gb|AAC69138.1| putative
mitochondrial carrier protein [Arabidopsis thaliana]
Length = 344
Score = 40.4 bits (93), Expect = 0.005
Identities = 17/24 (70%), Positives = 20/24 (82%)
Frame = -1
Query: 420 AFPANAATIVTWELALKMLGIKHE 349
AFPANAA IV WE ++KMLGIK +
Sbjct: 321 AFPANAAAIVAWEFSMKMLGIKRD 344
>pir||T18220 chitin synthase (EC 2.4.1.16) CHS1 - yeast (Candida albicans)
gi|3850147|emb|CAA21947.1| chitin synthase [Candida
albicans]
Length = 1026
Score = 33.1 bits (74), Expect = 0.83
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 300 YALKPIYTLDQSWMNRIMLSIYCIFPWMSF*FSFYQQDNVHYCFY--SGLFLNFKVRG 133
Y + I+T D S+ + L + I+ +S FSF+ N + FY +G +++K G
Sbjct: 675 YHFRKIWTTDHSYARKFWLHVEFIYQLVSLLFSFFSLSNFYLTFYFLTGSLVSYKSLG 732
>dbj|BAA07738.1| chitin synthase I [Candida albicans]
Length = 775
Score = 33.1 bits (74), Expect = 0.83
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -1
Query: 300 YALKPIYTLDQSWMNRIMLSIYCIFPWMSF*FSFYQQDNVHYCFY--SGLFLNFKVRG 133
Y + I+T D S+ + L + I+ +S FSF+ N + FY +G +++K G
Sbjct: 424 YHFRKIWTTDHSYARKFWLHVEFIYQLVSLLFSFFSLSNFYLTFYFLTGSLVSYKSLG 481
>sp|P49965|SR72_SCHMA SIGNAL RECOGNITION PARTICLE 72 KD PROTEIN (SRP72)
gi|508584|gb|AAA69689.1| signal recognition particle 72
kDa subunit
Length = 707
Score = 31.6 bits (70), Expect = 2.4
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 322 DNTTQAQVCFEANLHTRSELDEQNNAFNILHFSLDELLIFILSAGQRSL 176
D+ Q C E+ LH EL EQN ++ L LD F+L G+ L
Sbjct: 442 DSMKQIVNCIESTLHYYEELGEQNEIYSHL---LDNCAAFLLQQGEAKL 487
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 321,988,524
Number of Sequences: 1393205
Number of extensions: 5733979
Number of successful extensions: 10466
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10466
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 6923296128
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
