Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003719A_C01 KMC003719A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568971.1| leucine-rich repeat transmembrane protein kinas... 70 2e-11
gb|AAM64615.1| receptor-like protein kinase-like protein [Arabid... 69 3e-11
dbj|BAB08806.1| contains similarity to receptor-like protein kin... 67 9e-11
ref|NP_196925.1| leucine-rich repeat transmembrane protein kinas... 59 4e-10
gb|AAO38000.1| putative receptor-like protein kinase [Oryza sati... 51 9e-06
>ref|NP_568971.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g63410.1, supported by cDNA: 31105. [Arabidopsis
thaliana] gi|28392931|gb|AAO41901.1| putative
leucine-rich repeat transmembrane protein kinase
[Arabidopsis thaliana] gi|28827534|gb|AAO50611.1|
putative leucine-rich repeat transmembrane protein
kinase [Arabidopsis thaliana]
Length = 680
Score = 69.7 bits (169), Expect = 2e-11
Identities = 36/84 (42%), Positives = 48/84 (56%), Gaps = 1/84 (1%)
Frame = -2
Query: 496 NWSERLTILVSIPNAIHFLHTGMIPGFFKNRLKTNNIFLSDIGWQSSVTMDCPLSQRKMM 317
NWSERL +L + A+HFLHTG+IPGFF NRLKTNN+ L+Q +
Sbjct: 506 NWSERLNVLTGVAKAVHFLHTGVIPGFFSNRLKTNNVL---------------LNQHRFA 550
Query: 316 QAWSHGKSTQTEQS-SNTKIYNSW 248
+ +G S +E + NT+I SW
Sbjct: 551 KLSDYGLSIVSEATRHNTEIAKSW 574
>gb|AAM64615.1| receptor-like protein kinase-like protein [Arabidopsis thaliana]
Length = 680
Score = 68.9 bits (167), Expect = 3e-11
Identities = 35/84 (41%), Positives = 48/84 (56%), Gaps = 1/84 (1%)
Frame = -2
Query: 496 NWSERLTILVSIPNAIHFLHTGMIPGFFKNRLKTNNIFLSDIGWQSSVTMDCPLSQRKMM 317
NWSERL +L + A+HFLHTG+IPGFF NRLKTNN+ L+Q + +
Sbjct: 506 NWSERLNVLTGVAKAVHFLHTGVIPGFFSNRLKTNNVL---------------LNQHRFV 550
Query: 316 QAWSHGKSTQTEQS-SNTKIYNSW 248
+ +G +E + NT+I SW
Sbjct: 551 KLSDYGLXIVSEATRHNTEIAKSW 574
>dbj|BAB08806.1| contains similarity to receptor-like protein kinase~gene_id:MLE2.4
[Arabidopsis thaliana]
Length = 637
Score = 67.4 bits (163), Expect = 9e-11
Identities = 27/40 (67%), Positives = 33/40 (82%)
Frame = -2
Query: 496 NWSERLTILVSIPNAIHFLHTGMIPGFFKNRLKTNNIFLS 377
NWSERL +L + A+HFLHTG+IPGFF NRLKTNN+ L+
Sbjct: 506 NWSERLNVLTGVAKAVHFLHTGVIPGFFSNRLKTNNVLLN 545
>ref|NP_196925.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g14210.1 [Arabidopsis thaliana]
gi|9757802|dbj|BAB08300.1| receptor protein kinase-like
protein [Arabidopsis thaliana]
Length = 812
Score = 58.9 bits (141), Expect(2) = 4e-10
Identities = 24/40 (60%), Positives = 31/40 (77%)
Frame = -2
Query: 493 WSERLTILVSIPNAIHFLHTGMIPGFFKNRLKTNNIFLSD 374
W +RL IL+ I A+HFLHTG++PG F N+LKTNNI L +
Sbjct: 594 WPDRLAILIEIAKAVHFLHTGVMPGSFNNQLKTNNILLDE 633
Score = 26.2 bits (56), Expect(2) = 4e-10
Identities = 11/17 (64%), Positives = 14/17 (81%)
Frame = -1
Query: 368 MAKLSDYGLPIISEEND 318
+AKLSDYG+ I EEN+
Sbjct: 636 IAKLSDYGVSAIIEENE 652
>gb|AAO38000.1| putative receptor-like protein kinase [Oryza sativa (japonica
cultivar-group)]
Length = 833
Score = 50.8 bits (120), Expect = 9e-06
Identities = 28/88 (31%), Positives = 42/88 (46%)
Frame = -2
Query: 493 WSERLTILVSIPNAIHFLHTGMIPGFFKNRLKTNNIFLSDIGWQSSVTMDCPLSQRKMMQ 314
W++R++ + I N I FLH GM+PG F N LK NNI L + + P+
Sbjct: 588 WAQRISAAIGIANGIQFLHAGMMPGLFGNNLKINNILLDQNHVAKISSYNIPIL------ 641
Query: 313 AWSHGKSTQTEQSSNTKIYNSWPYNNDK 230
G++ ++E K + P NDK
Sbjct: 642 ----GEAMKSEGGPGGKHHTESPLLNDK 665
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,648,684
Number of Sequences: 1393205
Number of extensions: 8134392
Number of successful extensions: 20309
Number of sequences better than 10.0: 242
Number of HSP's better than 10.0 without gapping: 19535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20300
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
