Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003716A_C01 KMC003716A_c01
(772 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191531.1| copia-type reverse transcriptase-like protein; ... 51 2e-05
ref|NP_680163.1| similar to copia-type polyprotein; protein id: ... 51 2e-05
emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana] 51 2e-05
gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana] 51 2e-05
ref|NP_173613.1| polyprotein, putative; protein id: At1g21945.1 ... 51 2e-05
>ref|NP_191531.1| copia-type reverse transcriptase-like protein; protein id:
At3g59720.1 [Arabidopsis thaliana]
gi|11278363|pir||T49313 copia-type reverse
transcriptase-like protein - Arabidopsis thaliana
gi|6996308|emb|CAB75469.1| copia-type reverse
transcriptase-like protein [Arabidopsis thaliana]
Length = 1272
Score = 50.8 bits (120), Expect = 2e-05
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = -1
Query: 220 FANCELVTF-EALNGQHWRKVMAGEIHVIEKNET*ELTDLLGDQRLISVKWVHK------ 62
FA CE + F EA+ + WR M EI I+KN+T ELT L + I VKWV+K
Sbjct: 833 FAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSK 892
Query: 61 -QIQRHRILQLVKKKKKTRGG 2
+++R++ +LV K R G
Sbjct: 893 GEVERYK-ARLVAKGYSQRAG 912
>ref|NP_680163.1| similar to copia-type polyprotein; protein id: At5g13205.1
[Arabidopsis thaliana]
Length = 1352
Score = 50.8 bits (120), Expect = 2e-05
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = -1
Query: 220 FANCELVTF-EALNGQHWRKVMAGEIHVIEKNET*ELTDLLGDQRLISVKWVHK------ 62
FA CE + F EA+ + WR M EI I+KN+T ELT L + I VKWV+K
Sbjct: 833 FAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSK 892
Query: 61 -QIQRHRILQLVKKKKKTRGG 2
+++R++ +LV K R G
Sbjct: 893 GEVERYK-ARLVAKGYSQRAG 912
>emb|CAA69272.1| lectin receptor kinase [Arabidopsis thaliana]
Length = 623
Score = 50.8 bits (120), Expect = 2e-05
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = -1
Query: 220 FANCELVTF-EALNGQHWRKVMAGEIHVIEKNET*ELTDLLGDQRLISVKWVHK------ 62
FA CE + F EA+ + WR M EI I+KN+T ELT L + I VKWV+K
Sbjct: 330 FAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSK 389
Query: 61 -QIQRHRILQLVKKKKKTRGG 2
+++R++ +LV K R G
Sbjct: 390 GEVERYK-ARLVAKGYSQRAG 409
>gb|AAF16534.1|AC013482_8 T26F17.17 [Arabidopsis thaliana]
Length = 1291
Score = 50.8 bits (120), Expect = 2e-05
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = -1
Query: 220 FANCELVTF-EALNGQHWRKVMAGEIHVIEKNET*ELTDLLGDQRLISVKWVHK------ 62
FA CE + F EA+ + WR M EI I+KN+T ELT L + I VKWV+K
Sbjct: 772 FAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSK 831
Query: 61 -QIQRHRILQLVKKKKKTRGG 2
+++R++ +LV K R G
Sbjct: 832 GEVERYK-ARLVAKGYSQRAG 851
>ref|NP_173613.1| polyprotein, putative; protein id: At1g21945.1 [Arabidopsis thaliana]
Length = 1311
Score = 50.8 bits (120), Expect = 2e-05
Identities = 32/81 (39%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Frame = -1
Query: 220 FANCELVTF-EALNGQHWRKVMAGEIHVIEKNET*ELTDLLGDQRLISVKWVHK------ 62
FA CE + F EA+ + WR M EI I+KN+T ELT L + I VKWV+K
Sbjct: 792 FAECEPMDFQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSK 851
Query: 61 -QIQRHRILQLVKKKKKTRGG 2
+++R++ +LV K R G
Sbjct: 852 GEVERYK-ARLVAKGYSQRAG 871
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 613,932,502
Number of Sequences: 1393205
Number of extensions: 12643939
Number of successful extensions: 34443
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 32927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34425
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37815044670
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
