Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003715A_C01 KMC003715A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42372.1| unknown protein [Arabidopsis thaliana] gi|289508... 60 1e-08
ref|NP_192933.1| putative protein; protein id: At4g11960.1 [Arab... 60 1e-08
pir||T05120 hypothetical protein F7H19.70 - Arabidopsis thaliana... 59 5e-08
ref|NP_567672.1| putative protein; protein id: At4g22890.1, supp... 59 5e-08
pir||D86452 protein F6N18.13 [imported] - Arabidopsis thaliana g... 34 1.0
>dbj|BAC42372.1| unknown protein [Arabidopsis thaliana] gi|28950891|gb|AAO63369.1|
At4g11960 [Arabidopsis thaliana]
Length = 313
Score = 60.5 bits (145), Expect = 1e-08
Identities = 28/44 (63%), Positives = 35/44 (78%)
Frame = -1
Query: 380 MWEGSSVVMLGSDEQKFLEAAMGYVPEKPIMSNGDYADLKQRLQ 249
MWEGSSVVML SDEQ+FLEA+M YV PI+S+ +Y LK +L+
Sbjct: 116 MWEGSSVVMLSSDEQRFLEASMAYVSGNPILSDEEYDKLKMKLK 159
>ref|NP_192933.1| putative protein; protein id: At4g11960.1 [Arabidopsis thaliana]
gi|7485578|pir||T06603 hypothetical protein F16J13.30 -
Arabidopsis thaliana gi|4586101|emb|CAB40937.1| putative
protein [Arabidopsis thaliana]
gi|7267897|emb|CAB78239.1| putative protein [Arabidopsis
thaliana]
Length = 338
Score = 60.5 bits (145), Expect = 1e-08
Identities = 28/44 (63%), Positives = 35/44 (78%)
Frame = -1
Query: 380 MWEGSSVVMLGSDEQKFLEAAMGYVPEKPIMSNGDYADLKQRLQ 249
MWEGSSVVML SDEQ+FLEA+M YV PI+S+ +Y LK +L+
Sbjct: 116 MWEGSSVVMLSSDEQRFLEASMAYVSGNPILSDEEYDKLKMKLK 159
>pir||T05120 hypothetical protein F7H19.70 - Arabidopsis thaliana
gi|3292814|emb|CAA19804.1| putative protein [Arabidopsis
thaliana] gi|7269136|emb|CAB79244.1| putative protein
[Arabidopsis thaliana]
Length = 340
Score = 58.5 bits (140), Expect = 5e-08
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = -1
Query: 380 MWEGSSVVMLGSDEQKFLEAAMGYVPEKPIMSNGDYADLKQRLQ 249
MWEGSSVVML SDEQ+FLEA+M YV PI+++ +Y LK +L+
Sbjct: 125 MWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLK 168
>ref|NP_567672.1| putative protein; protein id: At4g22890.1, supported by cDNA:
13264., supported by cDNA: gi_15292940 [Arabidopsis
thaliana] gi|24030260|gb|AAN41305.1| unknown protein
[Arabidopsis thaliana]
Length = 324
Score = 58.5 bits (140), Expect = 5e-08
Identities = 27/44 (61%), Positives = 35/44 (79%)
Frame = -1
Query: 380 MWEGSSVVMLGSDEQKFLEAAMGYVPEKPIMSNGDYADLKQRLQ 249
MWEGSSVVML SDEQ+FLEA+M YV PI+++ +Y LK +L+
Sbjct: 127 MWEGSSVVMLSSDEQRFLEASMAYVSGNPILNDEEYDKLKLKLK 170
>pir||D86452 protein F6N18.13 [imported] - Arabidopsis thaliana
gi|6714281|gb|AAF25977.1|AC017118_14 F6N18.13
[Arabidopsis thaliana]
Length = 1994
Score = 34.3 bits (77), Expect = 1.0
Identities = 16/26 (61%), Positives = 19/26 (72%)
Frame = -2
Query: 505 SATRGGSTVTGTNPDLHRLGMEGAQE 428
+A RG TVTGT+ DL RL ME A+E
Sbjct: 1173 AAGRGAPTVTGTDADLRRLSMEAARE 1198
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,360,197
Number of Sequences: 1393205
Number of extensions: 8905129
Number of successful extensions: 15477
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15477
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
