KMC003712A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC003712A_C01 KMC003712A_c01
aaacgaataaacagaggccaattataaaGCAAGAAAAATGACAAGATATAGTAAACGACA
ATATGATAAGAAAAATTCCGGCATGTCAGAAAATTACAACACACTAATCTCGACGGTTTC
ACCACTAAAGGGATTCCAGAAAAAGGAAGTCCAGGCGTTCAAAACTTGACGATTTATAAA
GTCAAAACATAAAAGTGCACTGCAAAATATTAAGAAAATGAAACACCATACAATAGAACC
AGCAGAATCAGCGGTAGCGACGAAGAGAAAGAGAGTTGTTTTTCTTCCATGTTGCCCTGC
GGGATGGACGTGCTTTGTGGTGGCGATGTCCTTTGCCCACCAAACCCCTGTTATGTTTCC
CAGCAGAAGTCTTTCCGGTCAGTTCTCTGTGCTTATGGACTGGATTGCACAGCCAATGGA
TCCTGGGGTCATTCCTTATAGCAGTGTGGGCAACATCCACCAAAATGATCTCATAATATT
TGTAGGTCGAATCCTCATTCACCCAGTAAGAATTGAGGACCCTGAGGCCACCCAATTTCC
GTCCAGCTCGCTCCTCAGCAACTGACCTCTTGCTGCGCTGAAATTTCAGTTGAGTAACTC
CTTGGTTTGTTGGCTTCCCATAAACAATACCTTTGGGAAC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003712A_C01 KMC003712A_c01
(640 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193405.1| ribosomal protein; protein id: At4g16720.1, sup... 244 9e-64
pir||C71443 ribosomal protein L15.DL4730C, cytosolic - Arabidops... 243 2e-63
ref|NP_193470.1| 60S ribosomal protein L15 homolog; protein id: ... 243 2e-63
gb|AAN08216.1| ribosomal protein L15 [Oryza sativa (japonica cul... 238 5e-62
gb|AAK67641.1| ribosomal protein L15 [Homo sapiens] 233 1e-60
>ref|NP_193405.1| ribosomal protein; protein id: At4g16720.1, supported by cDNA:
23771., supported by cDNA: gi_13878178, supported by
cDNA: gi_16604445, supported by cDNA: gi_19715590
[Arabidopsis thaliana] gi|3122673|sp|O23515|RL15_ARATH
60S ribosomal protein L15 gi|7441105|pir||E71434
ribosomal protein L15.DL4385C, cytosolic - Arabidopsis
thaliana gi|2245027|emb|CAB10447.1| ribosomal protein
[Arabidopsis thaliana] gi|7268422|emb|CAB78714.1|
ribosomal protein [Arabidopsis thaliana]
gi|13878179|gb|AAK44167.1|AF370352_1 putative ribosomal
protein [Arabidopsis thaliana]
gi|16604446|gb|AAL24229.1| AT4g16720/dl4385c
[Arabidopsis thaliana] gi|19715591|gb|AAL91619.1|
AT4g16720/dl4385c [Arabidopsis thaliana]
gi|21592436|gb|AAM64387.1| ribosomal protein
[Arabidopsis thaliana] gi|22136774|gb|AAM91731.1|
putative ribosomal protein [Arabidopsis thaliana]
gi|23505795|gb|AAN28757.1| At4g16720/dl4385c
[Arabidopsis thaliana]
Length = 204
Score = 244 bits (622), Expect = 9e-64
Identities = 115/130 (88%), Positives = 121/130 (92%)
Frame = -1
Query: 640 VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYYEIIL 461
VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDSTYKYYEIIL
Sbjct: 75 VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIIL 134
Query: 460 VDVAHTAIRNDPRIHWLCNPVHKHRELTGKTSAGKHNRGLVGKGHRHHKARPSRRATWKK 281
VD AH A+RNDPRI+W+CNPVHKHREL G TS GK NRGL GKGH +HK RPSRRATWKK
Sbjct: 135 VDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKK 194
Query: 280 NNSLSLRRYR 251
NNSLSLRRYR
Sbjct: 195 NNSLSLRRYR 204
>pir||C71443 ribosomal protein L15.DL4730C, cytosolic - Arabidopsis thaliana
gi|2245098|emb|CAB10520.1| ribosomal protein
[Arabidopsis thaliana] gi|7268491|emb|CAB78742.1|
ribosomal protein [Arabidopsis thaliana]
Length = 216
Score = 243 bits (620), Expect = 2e-63
Identities = 114/130 (87%), Positives = 121/130 (92%)
Frame = -1
Query: 640 VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYYEIIL 461
VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDSTYKYYEIIL
Sbjct: 87 VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIIL 146
Query: 460 VDVAHTAIRNDPRIHWLCNPVHKHRELTGKTSAGKHNRGLVGKGHRHHKARPSRRATWKK 281
VD AH A+RNDPRI+W+CNPVHKHREL G TS GK NRGL GKGH +HK RPSRRATWKK
Sbjct: 147 VDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKK 206
Query: 280 NNSLSLRRYR 251
NNS+SLRRYR
Sbjct: 207 NNSISLRRYR 216
>ref|NP_193470.1| 60S ribosomal protein L15 homolog; protein id: At4g17390.1,
supported by cDNA: 31538., supported by cDNA:
gi_18175857 [Arabidopsis thaliana]
gi|18175858|gb|AAL59940.1| putative 60S ribosomal
protein L15-like protein [Arabidopsis thaliana]
gi|21592700|gb|AAM64649.1| 60S ribosomal protein L15
homolog [Arabidopsis thaliana]
gi|21689875|gb|AAM67498.1| putative 60S ribosomal
protein L15-like protein [Arabidopsis thaliana]
Length = 204
Score = 243 bits (620), Expect = 2e-63
Identities = 114/130 (87%), Positives = 121/130 (92%)
Frame = -1
Query: 640 VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYYEIIL 461
VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW+NEDSTYKYYEIIL
Sbjct: 75 VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIIL 134
Query: 460 VDVAHTAIRNDPRIHWLCNPVHKHRELTGKTSAGKHNRGLVGKGHRHHKARPSRRATWKK 281
VD AH A+RNDPRI+W+CNPVHKHREL G TS GK NRGL GKGH +HK RPSRRATWKK
Sbjct: 135 VDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKK 194
Query: 280 NNSLSLRRYR 251
NNS+SLRRYR
Sbjct: 195 NNSISLRRYR 204
>gb|AAN08216.1| ribosomal protein L15 [Oryza sativa (japonica cultivar-group)]
gi|28875969|gb|AAO59978.1| ribosomal protein L15 [Oryza
sativa (japonica cultivar-group)]
Length = 204
Score = 238 bits (607), Expect = 5e-62
Identities = 112/130 (86%), Positives = 121/130 (92%)
Frame = -1
Query: 640 VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYYEIIL 461
VPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGLRVLNSYWVNEDSTYKY+EIIL
Sbjct: 75 VPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIL 134
Query: 460 VDVAHTAIRNDPRIHWLCNPVHKHRELTGKTSAGKHNRGLVGKGHRHHKARPSRRATWKK 281
VDVAH+AIRNDPRI+WLC PVHKHREL G TSAGK RGL GKGH HHKARPSRRATWK+
Sbjct: 135 VDVAHSAIRNDPRINWLCKPVHKHRELRGLTSAGKKYRGLRGKGHTHHKARPSRRATWKR 194
Query: 280 NNSLSLRRYR 251
N ++SLRRYR
Sbjct: 195 NQTVSLRRYR 204
>gb|AAK67641.1| ribosomal protein L15 [Homo sapiens]
Length = 204
Score = 233 bits (595), Expect = 1e-60
Identities = 108/130 (83%), Positives = 120/130 (92%)
Frame = -1
Query: 640 VPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYYEIIL 461
VPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGR+LGGLRVLNSYWVNED TYKY+E+IL
Sbjct: 75 VPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRRLGGLRVLNSYWVNEDFTYKYFEVIL 134
Query: 460 VDVAHTAIRNDPRIHWLCNPVHKHRELTGKTSAGKHNRGLVGKGHRHHKARPSRRATWKK 281
VDVAH+A+RNDPRI+WLC PVHKHREL G TSAGK RGL GKGHRHHK RPSRRATWK+
Sbjct: 135 VDVAHSAVRNDPRINWLCKPVHKHRELRGLTSAGKKFRGLRGKGHRHHKNRPSRRATWKR 194
Query: 280 NNSLSLRRYR 251
N ++SLRRYR
Sbjct: 195 NQTVSLRRYR 204
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 587,889,958
Number of Sequences: 1393205
Number of extensions: 13485432
Number of successful extensions: 39339
Number of sequences better than 10.0: 157
Number of HSP's better than 10.0 without gapping: 37786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39281
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
MFB085d06_f |
BP040206 |
1 |
519 |
| 2 |
MPDL086c03_f |
AV780976 |
29 |
568 |
| 3 |
MPDL038c05_f |
AV778415 |
44 |
473 |
| 4 |
SPD027g02_f |
BP046161 |
48 |
597 |
| 5 |
GNf064a08 |
BP072091 |
50 |
240 |
| 6 |
GNf084f05 |
BP073578 |
50 |
209 |
| 7 |
SPD050b03_f |
BP047962 |
50 |
434 |
| 8 |
SPD077c11_f |
BP050153 |
50 |
567 |
| 9 |
MWM027e08_f |
AV765070 |
50 |
491 |
| 10 |
MFB003a11_f |
BP034084 |
53 |
532 |
| 11 |
MFBL034g04_f |
BP042980 |
98 |
651 |
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Lotus japonicus
Kazusa DNA Research Institute