Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003708A_C01 KMC003708A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO32065.1| Erwinia induced protein 1 [Solanum tuberosum] 76 3e-13
gb|AAN05509.1| Unknown protein [Oryza sativa (japonica cultivar-... 54 1e-06
gb|AAM65912.1| unknown [Arabidopsis thaliana] 40 0.015
gb|AAO51307.1| similar to Plasmodium falciparum. Hypothetical pr... 40 0.019
ref|NP_564153.1| expressed protein; protein id: At1g21880.1, sup... 40 0.025
>gb|AAO32065.1| Erwinia induced protein 1 [Solanum tuberosum]
Length = 354
Score = 75.9 bits (185), Expect = 3e-13
Identities = 43/117 (36%), Positives = 61/117 (51%), Gaps = 2/117 (1%)
Frame = -3
Query: 552 CDSSNNFRLQCEPSQHKPINDWSVCPSMECS--KNVLIGNTTSTDSCNRTICDYAGYSNS 379
CD+++N+ LQC+PSQ K + W CPSM+C N+ I N T++ CN T C YAGYSN
Sbjct: 248 CDAASNWTLQCQPSQIKS-SLWKTCPSMQCQGLDNLYIENVTTSSECNSTSCAYAGYSNQ 306
Query: 378 QISTILATQNTCAVPPSGSGTSSGSGSGDSGSGASRSNLHGWVWSSPLIVIHFLLFV 208
I T +TQ TC + D+ + R GW W+ L+ + F+
Sbjct: 307 TIFT-TSTQLTCP-------------ASDNSALGMRPGTWGWRWNVILVAAISMCFI 349
>gb|AAN05509.1| Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 356
Score = 54.3 bits (129), Expect = 1e-06
Identities = 40/121 (33%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Frame = -3
Query: 546 SSNNFRLQCEPSQHKPINDWSVCPSME-CSKNVLIGNTTSTDSCNRTICDYAGYSNSQ-- 376
SS ++L C Q+K CPS+ C+ + +G T T C T C Y+GYSNS
Sbjct: 258 SSTTYQLNCTAVQNKG------CPSVPLCNGTLKLGETNGT-GCGSTTCAYSGYSNSSSL 310
Query: 375 -ISTILATQNTCAVPPSGSGTSSGSGSGDSGSGASRSNLHGWVWSSPLIVIHFLLFVVFL 199
I T LAT T A GSG S + S +WS +I H +L ++
Sbjct: 311 IIQTSLATNQTTACQRGGSGRSQFARS---------------MWSMSVISFHMVLIIICF 355
Query: 198 L 196
L
Sbjct: 356 L 356
>gb|AAM65912.1| unknown [Arabidopsis thaliana]
Length = 350
Score = 40.4 bits (93), Expect = 0.015
Identities = 26/80 (32%), Positives = 36/80 (44%), Gaps = 2/80 (2%)
Frame = -3
Query: 552 CDSSNNFRLQCEPSQHKPINDWSVCPSM-ECSKNVLIGNTTSTDSCNR-TICDYAGYSNS 379
CD+ N+ L C+ S ++W CP +C + +L SC R C YAGYSN
Sbjct: 253 CDALKNWTLSCQSSSEIKPSNWQTCPPFSQCDRALL------NASCRRPRDCVYAGYSN- 305
Query: 378 QISTILATQNTCAVPPSGSG 319
TI T + +G G
Sbjct: 306 --QTIFTTASPACPDSAGPG 323
>gb|AAO51307.1| similar to Plasmodium falciparum. Hypothetical protein, expressed
[Dictyostelium discoideum]
Length = 1565
Score = 40.0 bits (92), Expect = 0.019
Identities = 30/83 (36%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Frame = -3
Query: 486 SVCPSMECSKNVLIGNTT--------STDSCNRTICDYAGYSNSQIST-ILATQNTCAVP 334
S+C ++ SK + GN+ ST S N +I + + +N+ ST +T N+C
Sbjct: 584 SICATLNSSKFIDDGNSKNCESSDILSTSSSNTSISNSSSLNNNNGSTNSTSTSNSCT-- 641
Query: 333 PSGSGTSSGSGSGDSGSGASRSN 265
SG+ SGSGSG SGSG + +N
Sbjct: 642 ---SGSGSGSGSG-SGSGGNTTN 660
>ref|NP_564153.1| expressed protein; protein id: At1g21880.1, supported by cDNA:
gi_15982869 [Arabidopsis thaliana]
gi|15982870|gb|AAL09782.1| At1g21880/T26F17_5
[Arabidopsis thaliana]
Length = 416
Score = 39.7 bits (91), Expect = 0.025
Identities = 26/71 (36%), Positives = 37/71 (51%), Gaps = 6/71 (8%)
Frame = -3
Query: 528 LQCEPSQHKPINDWSVCPSMEC-SKNVLIGNTT---STDSCNRTICDYAGYSNSQISTIL 361
L CEP+ C SM+C + N+++GN T ++ CN T CDY G +N I T+L
Sbjct: 263 LYCEPASLAVS-----CSSMQCRNSNLMLGNITVQQTSAGCNVTTCDYNGIANGTILTML 317
Query: 360 --ATQNTCAVP 334
+ Q C P
Sbjct: 318 TRSLQPRCPGP 328
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 514,401,394
Number of Sequences: 1393205
Number of extensions: 11903090
Number of successful extensions: 78021
Number of sequences better than 10.0: 156
Number of HSP's better than 10.0 without gapping: 55289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73416
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
