Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003707A_C02 KMC003707A_c02
(634 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplast ... 154 9e-37
gb|AAC24709.1| ribulose-phosphate 3-epimerase transit form [Expr... 154 9e-37
gb|AAC24710.1| ribulose-phosphate 3-epimerase mature form [Expre... 154 9e-37
gb|AAM19354.1|AF369887_1 ribulose-5-phosphate-3-epimerase [Pisum... 151 6e-36
ref|NP_200949.1| ribulose-5-phosphate-3-epimerase; protein id: A... 150 1e-35
>sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplast precursor
(Pentose-5-phosphate 3-epimerase) (PPE) (RPE) (R5P3E)
gi|2129493|pir||S62724 ribulose-phosphate 3-epimerase
(EC 5.1.3.1) precursor - spinach
gi|1162980|gb|AAC41677.1| ribulose-5-phosphate
3-epimerase gi|3264788|gb|AAC24708.1| ribulose-phosphate
3-epimerase [Spinacia oleracea] gi|1587969|prf||2207382A
D-ribulose-5-phosphate 3-epimerase
Length = 285
Score = 154 bits (389), Expect = 9e-37
Identities = 76/80 (95%), Positives = 78/80 (97%)
Frame = -1
Query: 634 GQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK 455
GQSFIESQVKKISDLR++C EKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK
Sbjct: 206 GQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK 265
Query: 454 DYAEAIKGIKTSKRPEPVAV 395
DYAEAIKGIK SKRPEPVAV
Sbjct: 266 DYAEAIKGIKASKRPEPVAV 285
>gb|AAC24709.1| ribulose-phosphate 3-epimerase transit form [Expression vector
pFL505]
Length = 285
Score = 154 bits (389), Expect = 9e-37
Identities = 76/80 (95%), Positives = 78/80 (97%)
Frame = -1
Query: 634 GQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK 455
GQSFIESQVKKISDLR++C EKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK
Sbjct: 206 GQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK 265
Query: 454 DYAEAIKGIKTSKRPEPVAV 395
DYAEAIKGIK SKRPEPVAV
Sbjct: 266 DYAEAIKGIKASKRPEPVAV 285
>gb|AAC24710.1| ribulose-phosphate 3-epimerase mature form [Expression vector
pFL506]
Length = 237
Score = 154 bits (389), Expect = 9e-37
Identities = 76/80 (95%), Positives = 78/80 (97%)
Frame = -1
Query: 634 GQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK 455
GQSFIESQVKKISDLR++C EKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK
Sbjct: 158 GQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK 217
Query: 454 DYAEAIKGIKTSKRPEPVAV 395
DYAEAIKGIK SKRPEPVAV
Sbjct: 218 DYAEAIKGIKASKRPEPVAV 237
>gb|AAM19354.1|AF369887_1 ribulose-5-phosphate-3-epimerase [Pisum sativum]
Length = 281
Score = 151 bits (382), Expect = 6e-36
Identities = 75/80 (93%), Positives = 77/80 (95%)
Frame = -1
Query: 634 GQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK 455
GQSFIES VKKI++LRRLC EKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK
Sbjct: 202 GQSFIESHVKKIAELRRLCVEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK 261
Query: 454 DYAEAIKGIKTSKRPEPVAV 395
DYAEAIKGIK SKRPEPVAV
Sbjct: 262 DYAEAIKGIKASKRPEPVAV 281
>ref|NP_200949.1| ribulose-5-phosphate-3-epimerase; protein id: At5g61410.1,
supported by cDNA: gi_15027996, supported by cDNA:
gi_20259208, supported by cDNA: gi_4102702 [Arabidopsis
thaliana] gi|4102703|gb|AAD09954.1|
ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]
gi|9757862|dbj|BAB08496.1|
ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]
gi|15027997|gb|AAK76529.1| putative
ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]
gi|20259209|gb|AAM14320.1| putative
ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana]
Length = 281
Score = 150 bits (379), Expect = 1e-35
Identities = 75/80 (93%), Positives = 77/80 (95%)
Frame = -1
Query: 634 GQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK 455
GQSFIESQVKKISDLR++CAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK
Sbjct: 202 GQSFIESQVKKISDLRKMCAEKGVNPWIEVDGGVTPANAYKVIEAGANALVAGSAVFGAK 261
Query: 454 DYAEAIKGIKTSKRPEPVAV 395
DYAEAIKGIK SKRP VAV
Sbjct: 262 DYAEAIKGIKASKRPAAVAV 281
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,433,065
Number of Sequences: 1393205
Number of extensions: 10678376
Number of successful extensions: 31126
Number of sequences better than 10.0: 213
Number of HSP's better than 10.0 without gapping: 30313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31097
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26154777244
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
