Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003705A_C01 KMC003705A_c01
(734 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G86280 protein T5E21.13 [imported] - Arabidopsis thaliana g... 127 1e-46
gb|AAL91182.1| splicing factor, putative [Arabidopsis thaliana] 127 1e-46
ref|NP_172917.1| splicing factor, putative; protein id: At1g1465... 127 1e-46
ref|NP_172916.1| splicing factor, putative; protein id: At1g1464... 94 2e-27
gb|EAA05190.1| ebiP8201 [Anopheles gambiae str. PEST] 73 3e-18
>pir||G86280 protein T5E21.13 [imported] - Arabidopsis thaliana
gi|7527720|gb|AAF63169.1|AC010657_5 T5E21.13 [Arabidopsis
thaliana]
Length = 1776
Score = 127 bits (318), Expect(3) = 1e-46
Identities = 66/97 (68%), Positives = 75/97 (77%), Gaps = 6/97 (6%)
Frame = +1
Query: 127 LLPLPAPPLDGNLGPLPESQV----IEERPSDGEQRPATLA--ATVATHTRTIGIIHPPP 288
+LPL APP DG LGPLP SQ+ +EER EQ + LA A VATHTRTIGIIHPPP
Sbjct: 998 ILPLEAPPTDGKLGPLPPSQLTDQEVEERELQAEQNNSNLAPPAAVATHTRTIGIIHPPP 1057
Query: 289 DIRTIVDKTSQFVAKNGPEFEKRIVANNAGNAKFNFL 399
DIRTIV+KT+QFV+KNG EFEKRI+ +N NAKFNFL
Sbjct: 1058 DIRTIVEKTAQFVSKNGLEFEKRIIVSNEKNAKFNFL 1094
Score = 94.4 bits (233), Expect(2) = 2e-27
Identities = 50/96 (52%), Positives = 63/96 (65%), Gaps = 5/96 (5%)
Frame = +1
Query: 127 LLPLPAPPLDGNLGPLPESQV----IEERPSDGEQRPATLAA-TVATHTRTIGIIHPPPD 291
+LPL APP DGNLGPLP SQ+ I+E GEQ + VATHT IGII+PPP+
Sbjct: 154 ILPLEAPPADGNLGPLPPSQLTDEEIKENEFQGEQNNSIQTPIAVATHTNPIGIIYPPPE 213
Query: 292 IRTIVDKTSQFVAKNGPEFEKRIVANNAGNAKFNFL 399
IR IV+ T+QFV++NG F ++ A NA F+FL
Sbjct: 214 IRKIVETTAQFVSQNGLAFGNKVKTEKANNANFSFL 249
Score = 70.5 bits (171), Expect(3) = 1e-46
Identities = 39/87 (44%), Positives = 49/87 (55%)
Frame = +3
Query: 393 FPSLSDPYHAYYQHRLAEFRAQNQSSTQQPGDLAGDSDVPESTPSAPAPDSNGVVEAAGE 572
F SDPYHA+YQH+L E+RAQN+ Q D G +D T +A EA
Sbjct: 1093 FLKSSDPYHAFYQHKLTEYRAQNKDGAQGTDDSDGTTDPQLDTGAADES------EAGDT 1146
Query: 573 KPDISAQSRPVRKVLDPPEAEQYTVRL 653
+PD+ AQ R K L+ PE E+YTVRL
Sbjct: 1147 QPDLQAQFRIPSKPLEAPEPEKYTVRL 1173
Score = 50.4 bits (119), Expect(2) = 2e-27
Identities = 36/115 (31%), Positives = 52/115 (44%), Gaps = 1/115 (0%)
Frame = +3
Query: 393 FPSLSDPYHAYYQHRLAEFRAQNQSSTQQPGDLAGDSDVPESTPSAPAPDSNGVVEAAGE 572
F +PYH +Y++++ E+ + Q G D++ P+ + A
Sbjct: 248 FLKSDNPYHGFYRYKVTEYSCHIRDGAQ--GTDVDDTEDPKLDDESDA------------ 293
Query: 573 KPDISAQSRPVRKVLDPPEAEQYTVRLR*RNNRGRAGYYK-AYSAVARNGNLF*R 734
KPD+ AQ R RK+L+ PE E+YTVRL K VARNG F R
Sbjct: 294 KPDLQAQFRAPRKILEAPEPEKYTVRLPEGIMEAELDIIKHTAQFVARNGQSFLR 348
Score = 32.3 bits (72), Expect = 7.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 301 IVDKTSQFVAKNGPEFEKRIVANNAGNAKFNFL 399
I+ T+QFVA+NG F + ++ N++F F+
Sbjct: 331 IIKHTAQFVARNGQSFLRELMRREVNNSQFQFM 363
Score = 32.3 bits (72), Expect(3) = 1e-46
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 658 EGITGEELDIIKLTA 702
EGITGEELDIIKLTA
Sbjct: 1175 EGITGEELDIIKLTA 1189
>gb|AAL91182.1| splicing factor, putative [Arabidopsis thaliana]
Length = 785
Score = 127 bits (318), Expect(3) = 1e-46
Identities = 66/97 (68%), Positives = 75/97 (77%), Gaps = 6/97 (6%)
Frame = +1
Query: 127 LLPLPAPPLDGNLGPLPESQV----IEERPSDGEQRPATLA--ATVATHTRTIGIIHPPP 288
+LPL APP DG LGPLP SQ+ +EER EQ + LA A VATHTRTIGIIHPPP
Sbjct: 7 ILPLEAPPTDGKLGPLPPSQLTDQEVEERELQAEQNNSNLAPPAAVATHTRTIGIIHPPP 66
Query: 289 DIRTIVDKTSQFVAKNGPEFEKRIVANNAGNAKFNFL 399
DIRTIV+KT+QFV+KNG EFEKRI+ +N NAKFNFL
Sbjct: 67 DIRTIVEKTAQFVSKNGLEFEKRIIVSNEKNAKFNFL 103
Score = 70.5 bits (171), Expect(3) = 1e-46
Identities = 39/87 (44%), Positives = 49/87 (55%)
Frame = +3
Query: 393 FPSLSDPYHAYYQHRLAEFRAQNQSSTQQPGDLAGDSDVPESTPSAPAPDSNGVVEAAGE 572
F SDPYHA+YQH+L E+RAQN+ Q D G +D T +A EA
Sbjct: 102 FLKSSDPYHAFYQHKLTEYRAQNKDGAQGTDDSDGTTDPQLDTGAADES------EAGDT 155
Query: 573 KPDISAQSRPVRKVLDPPEAEQYTVRL 653
+PD+ AQ R K L+ PE E+YTVRL
Sbjct: 156 QPDLQAQFRIPSKPLEAPEPEKYTVRL 182
Score = 32.3 bits (72), Expect(3) = 1e-46
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 658 EGITGEELDIIKLTA 702
EGITGEELDIIKLTA
Sbjct: 184 EGITGEELDIIKLTA 198
>ref|NP_172917.1| splicing factor, putative; protein id: At1g14650.1, supported by
cDNA: gi_19698892 [Arabidopsis thaliana]
Length = 785
Score = 127 bits (318), Expect(3) = 1e-46
Identities = 66/97 (68%), Positives = 75/97 (77%), Gaps = 6/97 (6%)
Frame = +1
Query: 127 LLPLPAPPLDGNLGPLPESQV----IEERPSDGEQRPATLA--ATVATHTRTIGIIHPPP 288
+LPL APP DG LGPLP SQ+ +EER EQ + LA A VATHTRTIGIIHPPP
Sbjct: 7 ILPLEAPPTDGKLGPLPPSQLTDQEVEERELQAEQNNSNLAPPAAVATHTRTIGIIHPPP 66
Query: 289 DIRTIVDKTSQFVAKNGPEFEKRIVANNAGNAKFNFL 399
DIRTIV+KT+QFV+KNG EFEKRI+ +N NAKFNFL
Sbjct: 67 DIRTIVEKTAQFVSKNGLEFEKRIIVSNEKNAKFNFL 103
Score = 70.5 bits (171), Expect(3) = 1e-46
Identities = 39/87 (44%), Positives = 49/87 (55%)
Frame = +3
Query: 393 FPSLSDPYHAYYQHRLAEFRAQNQSSTQQPGDLAGDSDVPESTPSAPAPDSNGVVEAAGE 572
F SDPYHA+YQH+L E+RAQN+ Q D G +D T +A EA
Sbjct: 102 FLKSSDPYHAFYQHKLTEYRAQNKDGAQGTDDSDGTTDPQLDTGAADES------EAGDT 155
Query: 573 KPDISAQSRPVRKVLDPPEAEQYTVRL 653
+PD+ AQ R K L+ PE E+YTVRL
Sbjct: 156 QPDLQAQFRIPSKPLEAPEPEKYTVRL 182
Score = 32.3 bits (72), Expect(3) = 1e-46
Identities = 15/15 (100%), Positives = 15/15 (100%)
Frame = +1
Query: 658 EGITGEELDIIKLTA 702
EGITGEELDIIKLTA
Sbjct: 184 EGITGEELDIIKLTA 198
>ref|NP_172916.1| splicing factor, putative; protein id: At1g14640.1 [Arabidopsis
thaliana]
Length = 735
Score = 94.4 bits (233), Expect(2) = 2e-27
Identities = 50/96 (52%), Positives = 63/96 (65%), Gaps = 5/96 (5%)
Frame = +1
Query: 127 LLPLPAPPLDGNLGPLPESQV----IEERPSDGEQRPATLAA-TVATHTRTIGIIHPPPD 291
+LPL APP DGNLGPLP SQ+ I+E GEQ + VATHT IGII+PPP+
Sbjct: 7 ILPLEAPPADGNLGPLPPSQLTDEEIKENEFQGEQNNSIQTPIAVATHTNPIGIIYPPPE 66
Query: 292 IRTIVDKTSQFVAKNGPEFEKRIVANNAGNAKFNFL 399
IR IV+ T+QFV++NG F ++ A NA F+FL
Sbjct: 67 IRKIVETTAQFVSQNGLAFGNKVKTEKANNANFSFL 102
Score = 50.4 bits (119), Expect(2) = 2e-27
Identities = 36/115 (31%), Positives = 52/115 (44%), Gaps = 1/115 (0%)
Frame = +3
Query: 393 FPSLSDPYHAYYQHRLAEFRAQNQSSTQQPGDLAGDSDVPESTPSAPAPDSNGVVEAAGE 572
F +PYH +Y++++ E+ + Q G D++ P+ + A
Sbjct: 101 FLKSDNPYHGFYRYKVTEYSCHIRDGAQ--GTDVDDTEDPKLDDESDA------------ 146
Query: 573 KPDISAQSRPVRKVLDPPEAEQYTVRLR*RNNRGRAGYYK-AYSAVARNGNLF*R 734
KPD+ AQ R RK+L+ PE E+YTVRL K VARNG F R
Sbjct: 147 KPDLQAQFRAPRKILEAPEPEKYTVRLPEGIMEAELDIIKHTAQFVARNGQSFLR 201
Score = 32.3 bits (72), Expect = 7.1
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +1
Query: 301 IVDKTSQFVAKNGPEFEKRIVANNAGNAKFNFL 399
I+ T+QFVA+NG F + ++ N++F F+
Sbjct: 184 IIKHTAQFVARNGQSFLRELMRREVNNSQFQFM 216
>gb|EAA05190.1| ebiP8201 [Anopheles gambiae str. PEST]
Length = 675
Score = 73.2 bits (178), Expect(2) = 3e-18
Identities = 36/68 (52%), Positives = 46/68 (66%)
Frame = +1
Query: 196 ERPSDGEQRPATLAATVATHTRTIGIIHPPPDIRTIVDKTSQFVAKNGPEFEKRIVANNA 375
E+ D E+ TL+ + +GII+PPP++R IVDKT+ FVA+NGPEFE RI N
Sbjct: 2 EKEVDVEKPAPTLSGPI------VGIIYPPPEVRNIVDKTASFVARNGPEFESRIRQNEL 55
Query: 376 GNAKFNFL 399
GN KFNFL
Sbjct: 56 GNPKFNFL 63
Score = 40.8 bits (94), Expect(2) = 3e-18
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Frame = +3
Query: 393 FPSLSDPYHAYYQHRLAEFR-AQNQSSTQQPGDLAGDS-DVPES-TPSAPAPDSNGVVEA 563
F S DPYHAYYQH++ E R + SS+ G AG + +P++ P+A +++A
Sbjct: 62 FLSPGDPYHAYYQHKVQEIREGRTDSSSGAAGGQAGSAGGLPKAQVPNATQQKQQELLKA 121
Query: 564 AGEKPDISAQSRP-VRKVLDPPEAEQYTVRLR*RNNRGRAGYYKAYSAVARNGNLF 728
E+ + P + DPP + + VARNG LF
Sbjct: 122 VTEQQFVPKDPPPEFEFIADPPSISALDLDI----------VKLTAQFVARNGRLF 167
Score = 33.1 bits (74), Expect = 4.2
Identities = 28/92 (30%), Positives = 40/92 (43%), Gaps = 11/92 (11%)
Frame = +1
Query: 157 GNLGPLPESQVIEERPSDGEQRPATLAATVATHTRT-------IGIIHPPPDIRT----I 303
G+ G LP++QV P+ +Q+ L V I PP I I
Sbjct: 97 GSAGGLPKAQV----PNATQQKQQELLKAVTEQQFVPKDPPPEFEFIADPPSISALDLDI 152
Query: 304 VDKTSQFVAKNGPEFEKRIVANNAGNAKFNFL 399
V T+QFVA+NG F ++ N +F+FL
Sbjct: 153 VKLTAQFVARNGRLFLTNLMNREQRNCQFDFL 184
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 671,718,885
Number of Sequences: 1393205
Number of extensions: 15993266
Number of successful extensions: 59406
Number of sequences better than 10.0: 109
Number of HSP's better than 10.0 without gapping: 54398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59225
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
