Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003703A_C01 KMC003703A_c01
(585 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191007.1| putative protein; protein id: At3g54390.1, supp... 102 3e-23
ref|NP_182001.1| unknown protein; protein id: At2g44730.1 [Arabi... 49 6e-05
ref|NP_189092.1| hypothetical protein; protein id: At3g24490.1 [... 39 0.063
gb|EAA19415.1| hypothetical protein [Plasmodium yoelii yoelii] 38 0.11
gb|EAA20431.1| hypothetical protein [Plasmodium yoelii yoelii] 38 0.11
>ref|NP_191007.1| putative protein; protein id: At3g54390.1, supported by cDNA:
106702. [Arabidopsis thaliana] gi|11357992|pir||T47598
hypothetical protein T12E18.80 - Arabidopsis thaliana
gi|7288017|emb|CAB81804.1| putative protein [Arabidopsis
thaliana] gi|21536636|gb|AAM60968.1| unknown
[Arabidopsis thaliana] gi|22655184|gb|AAM98182.1|
putative protein [Arabidopsis thaliana]
Length = 296
Score = 102 bits (254), Expect(2) = 3e-23
Identities = 51/70 (72%), Positives = 62/70 (87%)
Frame = -3
Query: 505 QRRRKEDSEIAESIRWLAEVMVRSEPTRMDTMKEIEKMRVETEAKRGEMDLKRTEIIAHT 326
+R ++E EIA SIRWLAEV++RSE RM+TMKEIE+MR E EAKRGE+DLKRTEI+A+T
Sbjct: 208 RRYKEEKEEIAGSIRWLAEVVMRSERARMETMKEIERMRAEAEAKRGELDLKRTEIMANT 267
Query: 325 QLEIARIFAS 296
QLEIARIFA+
Sbjct: 268 QLEIARIFAA 277
Score = 27.7 bits (60), Expect(2) = 3e-23
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = -1
Query: 291 NKGVDSSLRIGRS 253
NKGVDSSLRIGR+
Sbjct: 284 NKGVDSSLRIGRN 296
>ref|NP_182001.1| unknown protein; protein id: At2g44730.1 [Arabidopsis thaliana]
gi|7485544|pir||T01600 hypothetical protein At2g44730
[imported] - Arabidopsis thaliana
gi|3341693|gb|AAC27475.1| unknown protein [Arabidopsis
thaliana]
Length = 372
Score = 48.5 bits (114), Expect = 6e-05
Identities = 26/61 (42%), Positives = 39/61 (63%)
Frame = -3
Query: 481 EIAESIRWLAEVMVRSEPTRMDTMKEIEKMRVETEAKRGEMDLKRTEIIAHTQLEIARIF 302
EIA +I+ L + +VR+E TRM+ +EIE MR++TE +KRT++I +Q I F
Sbjct: 300 EIASAIKLLGDTLVRTEQTRMEMTREIEAMRMDTE-------MKRTKMILESQQRIVEAF 352
Query: 301 A 299
A
Sbjct: 353 A 353
>ref|NP_189092.1| hypothetical protein; protein id: At3g24490.1 [Arabidopsis
thaliana] gi|9294038|dbj|BAB01995.1|
gene_id:MOB24.1~unknown protein [Arabidopsis thaliana]
Length = 333
Score = 38.5 bits (88), Expect = 0.063
Identities = 18/58 (31%), Positives = 37/58 (63%)
Frame = -3
Query: 478 IAESIRWLAEVMVRSEPTRMDTMKEIEKMRVETEAKRGEMDLKRTEIIAHTQLEIARI 305
+A+S+ +V + E ++ + MKE+EKMR + + +++L++ +I+ Q EIAR+
Sbjct: 247 LADSVERFGKVYEKMEKSKKEQMKELEKMRADFQR---DLELQKKQIVDRAQSEIARL 301
>gb|EAA19415.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 357
Score = 37.7 bits (86), Expect = 0.11
Identities = 30/93 (32%), Positives = 50/93 (53%)
Frame = +3
Query: 219 YSIRLNDLLNLSFFQFSMMNQHLYWTLAKILAISSCVWAMISVLLRSISPLLASVSTLIF 398
YS + L LS FS + T + + ISS +++ +SV+ +I L +S+ IF
Sbjct: 261 YSTISSALYALSSITFSDLPVISSITFSDLPVISSTIFSALSVISSTIFSDLPVISSTIF 320
Query: 399 SISFMVSILVGSDLTITSASHLMLSAISESSFL 497
S ++S + SDL + S++ + SA+S SFL
Sbjct: 321 SALSVISSTIFSDLPVISST--IFSALSVISFL 351
>gb|EAA20431.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 143
Score = 37.7 bits (86), Expect = 0.11
Identities = 31/97 (31%), Positives = 54/97 (54%), Gaps = 4/97 (4%)
Frame = +3
Query: 219 YSIRLNDLLNLSFFQFSMMNQHLYW----TLAKILAISSCVWAMISVLLRSISPLLASVS 386
YSI +DL + +S ++ LY T + + ISS +++ +SV+ +I L +S
Sbjct: 47 YSITFSDLPVI----YSTISSALYALSSITFSDLPVISSTIFSALSVISSTIFSDLPVIS 102
Query: 387 TLIFSISFMVSILVGSDLTITSASHLMLSAISESSFL 497
+ IFS ++S + SDL + S++ + SA+S SFL
Sbjct: 103 STIFSALSVISSTIFSDLPVISST--IFSALSVISFL 137
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,600,898
Number of Sequences: 1393205
Number of extensions: 9821023
Number of successful extensions: 33495
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 31491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33341
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
