Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003698A_C01 KMC003698A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191112.1| putative protein; protein id: At3g55530.1, supp... 132 2e-30
ref|NP_035406.1| ring finger protein 12 [Mus musculus] gi|131245... 71 1e-11
ref|NP_510498.1| Ring finger protein 13 (51.2 kD) [Caenorhabditi... 70 1e-11
ref|NP_563717.1| expressed protein; protein id: At1g04790.1, sup... 70 2e-11
gb|EAA07852.1| agCP1818 [Anopheles gambiae str. PEST] 69 5e-11
>ref|NP_191112.1| putative protein; protein id: At3g55530.1, supported by cDNA:
gi_14423515 [Arabidopsis thaliana]
gi|11358197|pir||T47692 hypothetical protein T22E16.190
- Arabidopsis thaliana gi|7076796|emb|CAB75911.1|
putative protein [Arabidopsis thaliana]
gi|14423516|gb|AAK62440.1|AF386995_1 putative protein
[Arabidopsis thaliana]
Length = 273
Score = 132 bits (333), Expect = 2e-30
Identities = 67/101 (66%), Positives = 78/101 (76%), Gaps = 3/101 (2%)
Frame = -2
Query: 541 PSSGSSLP-QASPSTSAEKEQDKSNAVGSMKVSDDELTCSVCLEQVNVGDILRSLPCLHQ 365
P +G SL QAS S+SAEK D +N S K ++DELTCSVCLEQV VG+I+R+LPCLHQ
Sbjct: 175 PENGCSLAKQASTSSSAEKMLDSANE--SKKGTEDELTCSVCLEQVTVGEIVRTLPCLHQ 232
Query: 364 FHANCIDPWLRQQGTCPVCKFRAGTGWSESGH--NDIADMV 248
FHA CIDPWLRQQGTCPVCKFRA +GW E +D +DMV
Sbjct: 233 FHAGCIDPWLRQQGTCPVCKFRAHSGWQEQDEIDDDASDMV 273
>ref|NP_035406.1| ring finger protein 12 [Mus musculus]
gi|13124535|sp|Q9WTV7|RN12_MOUSE RING finger protein 12
(LIM domain interacting RING finger protein) (RING
finger LIM domain-binding protein) (R-LIM)
gi|4959044|gb|AAD34209.1|AF069992_1 LIM domain
interacting RING finger protein [Mus musculus]
Length = 600
Score = 70.9 bits (172), Expect = 1e-11
Identities = 30/62 (48%), Positives = 40/62 (64%)
Frame = -2
Query: 490 KEQDKSNAVGSMKVSDDELTCSVCLEQVNVGDILRSLPCLHQFHANCIDPWLRQQGTCPV 311
KEQ + A+ S +D TCSVC+ + GD LR LPC H+FH +CID WL + TCP+
Sbjct: 526 KEQIDNLAMRSFGENDALKTCSVCITEYTEGDKLRKLPCSHEFHVHCIDRWLSENSTCPI 585
Query: 310 CK 305
C+
Sbjct: 586 CR 587
>ref|NP_510498.1| Ring finger protein 13 (51.2 kD) [Caenorhabditis elegans]
gi|7496255|pir||T19377 hypothetical protein C18B12.4 -
Caenorhabditis elegans gi|3642014|emb|CAA20925.1|
Hypothetical protein C18B12.4 [Caenorhabditis elegans]
Length = 456
Score = 70.5 bits (171), Expect = 1e-11
Identities = 37/80 (46%), Positives = 46/80 (57%), Gaps = 2/80 (2%)
Frame = -2
Query: 490 KEQDKSNAVGSMKVSDDELTCSVCLEQVNVGDILRSLPCLHQFHANCIDPWLRQ-QGTCP 314
K K V ++ DD TC++CLE G+ LR LPC H FH NCID WL Q + CP
Sbjct: 227 KRNLKKIPVKKYRLGDDPDTCAICLESFASGEKLRHLPCRHVFHCNCIDVWLTQTRKICP 286
Query: 313 VCKFRAGT-GWSESGHNDIA 257
+CK + GT SE ND+A
Sbjct: 287 LCKRKIGTDSDSECSTNDLA 306
>ref|NP_563717.1| expressed protein; protein id: At1g04790.1, supported by cDNA:
gi_15450835 [Arabidopsis thaliana]
gi|15450836|gb|AAK96689.1| Unknown protein [Arabidopsis
thaliana]
Length = 634
Score = 70.1 bits (170), Expect = 2e-11
Identities = 26/43 (60%), Positives = 33/43 (76%)
Frame = -2
Query: 433 TCSVCLEQVNVGDILRSLPCLHQFHANCIDPWLRQQGTCPVCK 305
TC +CLE +GD +R LPCLH+FH +CIDPWL + +CPVCK
Sbjct: 588 TCVICLETPKIGDTIRHLPCLHKFHKDCIDPWLGRSKSCPVCK 630
>gb|EAA07852.1| agCP1818 [Anopheles gambiae str. PEST]
Length = 247
Score = 68.6 bits (166), Expect = 5e-11
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Frame = -2
Query: 523 LPQASPSTSAEKEQDKSNAVGSMKVSDDE----LTCSVCLEQVNVGDILRSLPCLHQFHA 356
L Q S E+++ A+ ++ +S+++ L CSVC E VG+ +R LPCLH +H
Sbjct: 119 LNQMDNSGPPPLEKERIAAIPTVTISEEQVERKLQCSVCFEDFVVGESVRKLPCLHVYHE 178
Query: 355 NCIDPWLRQQGTCPVCK 305
CI PWL GTCP+C+
Sbjct: 179 PCIIPWLELHGTCPICR 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 446,239,655
Number of Sequences: 1393205
Number of extensions: 8700997
Number of successful extensions: 26801
Number of sequences better than 10.0: 1253
Number of HSP's better than 10.0 without gapping: 25729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26603
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
