Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003697A_C01 KMC003697A_c01
(927 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565111.1| nodulin-like protein; protein id: At1g75500.1, ... 200 2e-50
pir||E96785 protein F10A5.28 [imported] - Arabidopsis thaliana g... 200 2e-50
dbj|BAB17350.1| putative nodulin [Oryza sativa (japonica cultiva... 144 2e-33
ref|NP_188448.1| integral membrane protein, putative; protein id... 135 7e-31
dbj|BAB02033.1| nodulin-like protein [Arabidopsis thaliana] 135 7e-31
>ref|NP_565111.1| nodulin-like protein; protein id: At1g75500.1, supported by cDNA:
gi_15028078, supported by cDNA: gi_20259306 [Arabidopsis
thaliana] gi|15028079|gb|AAK76570.1| putative nodulin
protein [Arabidopsis thaliana]
gi|20259307|gb|AAM14389.1| putative nodulin protein
[Arabidopsis thaliana] gi|23397059|gb|AAN31815.1|
putative nodulin [Arabidopsis thaliana]
Length = 389
Score = 200 bits (509), Expect = 2e-50
Identities = 103/138 (74%), Positives = 118/138 (84%), Gaps = 4/138 (2%)
Frame = -1
Query: 918 ERDAQAWIFHSGGEVFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMA 739
ERD+QAW+FHSG E+FTILYAG+VASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMA
Sbjct: 252 ERDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMA 311
Query: 738 SLALGEEFYLGGIIGAILIVVGLYLVLWGKNAERKF-AMEHAAIMSTPEHSSIR---SAS 571
S+ALGEEFYLGGIIGA+LI+ GLY VL+GK+ ERKF A+E AAI S+ EH R S +
Sbjct: 312 SIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFAALEKAAIQSSAEHGIERAPVSRN 371
Query: 570 HAKTSLTQPLLPSSTENV 517
K+S+T PLL ST+NV
Sbjct: 372 SIKSSITTPLLHQSTDNV 389
>pir||E96785 protein F10A5.28 [imported] - Arabidopsis thaliana
gi|9369372|gb|AAF87121.1|AC006434_17 F10A5.28
[Arabidopsis thaliana]
Length = 355
Score = 200 bits (509), Expect = 2e-50
Identities = 103/138 (74%), Positives = 118/138 (84%), Gaps = 4/138 (2%)
Frame = -1
Query: 918 ERDAQAWIFHSGGEVFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMA 739
ERD+QAW+FHSG E+FTILYAG+VASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMA
Sbjct: 218 ERDSQAWVFHSGWELFTILYAGIVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMA 277
Query: 738 SLALGEEFYLGGIIGAILIVVGLYLVLWGKNAERKF-AMEHAAIMSTPEHSSIR---SAS 571
S+ALGEEFYLGGIIGA+LI+ GLY VL+GK+ ERKF A+E AAI S+ EH R S +
Sbjct: 278 SIALGEEFYLGGIIGAVLIIAGLYFVLYGKSEERKFAALEKAAIQSSAEHGIERAPVSRN 337
Query: 570 HAKTSLTQPLLPSSTENV 517
K+S+T PLL ST+NV
Sbjct: 338 SIKSSITTPLLHQSTDNV 355
>dbj|BAB17350.1| putative nodulin [Oryza sativa (japonica cultivar-group)]
gi|14090211|dbj|BAB55472.1| P0494A10.12 [Oryza sativa
(japonica cultivar-group)]
Length = 374
Score = 144 bits (362), Expect = 2e-33
Identities = 64/95 (67%), Positives = 81/95 (84%)
Frame = -1
Query: 918 ERDAQAWIFHSGGEVFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVAIMA 739
E D W +SG E+FTILYAG+VASG+AFA+QIWCIDRGGP+F AV+QPVQT+ VA+MA
Sbjct: 238 EEDLSRWKVNSGSELFTILYAGLVASGVAFALQIWCIDRGGPLFTAVFQPVQTVAVAVMA 297
Query: 738 SLALGEEFYLGGIIGAILIVVGLYLVLWGKNAERK 634
++ LG++ Y GGIIGA+LIV+GLY VLWGK+ E+K
Sbjct: 298 AIILGDQLYSGGIIGAVLIVIGLYFVLWGKSEEKK 332
>ref|NP_188448.1| integral membrane protein, putative; protein id: At3g18200.1
[Arabidopsis thaliana]
Length = 360
Score = 135 bits (341), Expect = 7e-31
Identities = 66/124 (53%), Positives = 86/124 (69%)
Frame = -1
Query: 927 LIVERDAQAWIFHSGGEVFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVA 748
L VE D WI S E+FTILYAG++ASG+ +Q WCI + GPVFVAV+QP+QTL+VA
Sbjct: 232 LFVETDLNNWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVA 291
Query: 747 IMASLALGEEFYLGGIIGAILIVVGLYLVLWGKNAERKFAMEHAAIMSTPEHSSIRSASH 568
MA L LG++ Y GGI+GA+ I++GLYLVLWGKN ERK A+E + + A H
Sbjct: 292 AMAFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERKLALEESQQDPESLTKHLLEAQH 351
Query: 567 AKTS 556
K++
Sbjct: 352 KKSN 355
>dbj|BAB02033.1| nodulin-like protein [Arabidopsis thaliana]
Length = 383
Score = 135 bits (341), Expect = 7e-31
Identities = 66/124 (53%), Positives = 86/124 (69%)
Frame = -1
Query: 927 LIVERDAQAWIFHSGGEVFTILYAGVVASGIAFAVQIWCIDRGGPVFVAVYQPVQTLVVA 748
L VE D WI S E+FTILYAG++ASG+ +Q WCI + GPVFVAV+QP+QTL+VA
Sbjct: 255 LFVETDLNNWIIVSWEELFTILYAGIIASGLVVYLQTWCIYKSGPVFVAVFQPLQTLLVA 314
Query: 747 IMASLALGEEFYLGGIIGAILIVVGLYLVLWGKNAERKFAMEHAAIMSTPEHSSIRSASH 568
MA L LG++ Y GGI+GA+ I++GLYLVLWGKN ERK A+E + + A H
Sbjct: 315 AMAFLILGDQLYSGGIVGAVFIMLGLYLVLWGKNEERKLALEESQQDPESLTKHLLEAQH 374
Query: 567 AKTS 556
K++
Sbjct: 375 KKSN 378
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 793,042,104
Number of Sequences: 1393205
Number of extensions: 17124559
Number of successful extensions: 44147
Number of sequences better than 10.0: 286
Number of HSP's better than 10.0 without gapping: 41686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44086
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 51305130920
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
