Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003696A_C03 KMC003696A_c03
(1079 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194773.1| nucleotide sugar epimerase-like protein; protei... 138 1e-36
ref|NP_182056.1| putative nucleotide sugar epimerase; protein id... 117 1e-27
ref|NP_171702.1| nucleotide sugar epimerase, putative; protein i... 114 1e-27
gb|AAM61323.1| nucleotide sugar epimerase, putative [Arabidopsis... 114 1e-27
ref|NP_191922.1| putative nucleotide sugar epimerase; protein id... 113 3e-27
>ref|NP_194773.1| nucleotide sugar epimerase-like protein; protein id: At4g30440.1,
supported by cDNA: 154741., supported by cDNA:
gi_15810528, supported by cDNA: gi_20466777 [Arabidopsis
thaliana] gi|25407641|pir||A85356 nucleotide sugar
epimerase-like protein [imported] - Arabidopsis thaliana
gi|7269945|emb|CAB79762.1| nucleotide sugar
epimerase-like protein [Arabidopsis thaliana]
gi|15810529|gb|AAL07152.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
gi|20466778|gb|AAM20706.1| nucleotide sugar
epimerase-like protein [Arabidopsis thaliana]
gi|21553636|gb|AAM62729.1| nucleotide sugar
epimerase-like protein [Arabidopsis thaliana]
gi|23198200|gb|AAN15627.1| nucleotide sugar
epimerase-like protein [Arabidopsis thaliana]
Length = 429
Score = 138 bits (348), Expect(2) = 1e-36
Identities = 65/75 (86%), Positives = 68/75 (90%)
Frame = -3
Query: 1029 DTSPVTVPTLVSILEGHLKVKAKRNVVDMPGNGDVPFTHANISSARRELGYKPTTDLPTG 850
+TSPVTVP LV ILE HLKVKAKRN V+MPGNGDVPFTHANISSAR E GYKPTTDL TG
Sbjct: 348 NTSPVTVPILVDILEKHLKVKAKRNFVEMPGNGDVPFTHANISSARNEFGYKPTTDLETG 407
Query: 849 LKKFVKWYLSYYGYN 805
LKKFV+WYLSYYGYN
Sbjct: 408 LKKFVRWYLSYYGYN 422
Score = 38.1 bits (87), Expect(2) = 1e-36
Identities = 16/17 (94%), Positives = 17/17 (99%)
Frame = -1
Query: 1079 SGGKKKGAAPYRIFNLG 1029
SGGKK+GAAPYRIFNLG
Sbjct: 331 SGGKKRGAAPYRIFNLG 347
>ref|NP_182056.1| putative nucleotide sugar epimerase; protein id: At2g45310.1
[Arabidopsis thaliana] gi|25408944|pir||A84889 probable
nucleotide sugar epimerase [imported] - Arabidopsis
thaliana gi|2583123|gb|AAB82632.1| putative nucleotide
sugar epimerase [Arabidopsis thaliana]
gi|28393645|gb|AAO42241.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
gi|28973495|gb|AAO64072.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
Length = 437
Score = 117 bits (292), Expect(2) = 1e-27
Identities = 56/72 (77%), Positives = 62/72 (85%)
Frame = -3
Query: 1029 DTSPVTVPTLVSILEGHLKVKAKRNVVDMPGNGDVPFTHANISSARRELGYKPTTDLPTG 850
+TSPV V LV ILE LKVKAK+N++ MP NGDVPFTHANIS A+RELGYKPTTDL TG
Sbjct: 357 NTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGYKPTTDLQTG 416
Query: 849 LKKFVKWYLSYY 814
LKKFV+WYLSYY
Sbjct: 417 LKKFVRWYLSYY 428
Score = 29.6 bits (65), Expect(2) = 1e-27
Identities = 12/17 (70%), Positives = 14/17 (81%)
Frame = -1
Query: 1079 SGGKKKGAAPYRIFNLG 1029
SGGKK+G A R+FNLG
Sbjct: 340 SGGKKRGPAQLRVFNLG 356
>ref|NP_171702.1| nucleotide sugar epimerase, putative; protein id: At1g02000.1,
supported by cDNA: 116833., supported by cDNA:
gi_12248040 [Arabidopsis thaliana]
gi|25518289|pir||A86152 hypothetical protein F22M8.13
[imported] - Arabidopsis thaliana
gi|8570451|gb|AAF76478.1|AC020622_12 Contains similarity
to CAPI protein from Staphylococcus aureus gi|P39858 and
contains a NAD dependent epimerase/dehydratase PF|01370
domain. ESTs gb|N97076, gb|AI997010 come from this gene.
[Arabidopsis thaliana]
gi|12248041|gb|AAG50112.1|AF334734_1 putative nucleotide
sugar epimerase [Arabidopsis thaliana]
Length = 434
Score = 114 bits (286), Expect(2) = 1e-27
Identities = 55/72 (76%), Positives = 62/72 (85%)
Frame = -3
Query: 1029 DTSPVTVPTLVSILEGHLKVKAKRNVVDMPGNGDVPFTHANISSARRELGYKPTTDLPTG 850
+TSPV V LVSILE LKVKAKRN++ +P NGDVPFTHANISSA+RE GYKP+TDL TG
Sbjct: 352 NTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTG 411
Query: 849 LKKFVKWYLSYY 814
LKKFV+WYL YY
Sbjct: 412 LKKFVRWYLGYY 423
Score = 31.6 bits (70), Expect(2) = 1e-27
Identities = 13/17 (76%), Positives = 15/17 (87%)
Frame = -1
Query: 1079 SGGKKKGAAPYRIFNLG 1029
SGGKK+GAA R+FNLG
Sbjct: 335 SGGKKRGAAQLRVFNLG 351
>gb|AAM61323.1| nucleotide sugar epimerase, putative [Arabidopsis thaliana]
Length = 419
Score = 114 bits (286), Expect(2) = 1e-27
Identities = 55/72 (76%), Positives = 62/72 (85%)
Frame = -3
Query: 1029 DTSPVTVPTLVSILEGHLKVKAKRNVVDMPGNGDVPFTHANISSARRELGYKPTTDLPTG 850
+TSPV V LVSILE LKVKAKRN++ +P NGDVPFTHANISSA+RE GYKP+TDL TG
Sbjct: 337 NTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGYKPSTDLQTG 396
Query: 849 LKKFVKWYLSYY 814
LKKFV+WYL YY
Sbjct: 397 LKKFVRWYLGYY 408
Score = 31.6 bits (70), Expect(2) = 1e-27
Identities = 13/17 (76%), Positives = 15/17 (87%)
Frame = -1
Query: 1079 SGGKKKGAAPYRIFNLG 1029
SGGKK+GAA R+FNLG
Sbjct: 320 SGGKKRGAAQLRVFNLG 336
>ref|NP_191922.1| putative nucleotide sugar epimerase; protein id: At4g00110.1
[Arabidopsis thaliana] gi|7486537|pir||T01339
hypothetical protein F6N15.16 - Arabidopsis thaliana
gi|3193316|gb|AAC19298.1| contains similarity to
nucleotide sugar epimerases [Arabidopsis thaliana]
gi|7267098|emb|CAB80769.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
Length = 430
Score = 113 bits (283), Expect(2) = 3e-27
Identities = 57/78 (73%), Positives = 64/78 (81%)
Frame = -3
Query: 1029 DTSPVTVPTLVSILEGHLKVKAKRNVVDMPGNGDVPFTHANISSARRELGYKPTTDLPTG 850
+TSPV V LV+ILE LKVKAKRN++ +P NGDV FTHANISSA+RELGYKPTTDL TG
Sbjct: 351 NTSPVPVTDLVTILERLLKVKAKRNIMKLPRNGDVQFTHANISSAQRELGYKPTTDLQTG 410
Query: 849 LKKFVKWYLSYYGYNHGK 796
LKKF +WYL Y YN GK
Sbjct: 411 LKKFARWYLGY--YNGGK 426
Score = 31.6 bits (70), Expect(2) = 3e-27
Identities = 13/17 (76%), Positives = 15/17 (87%)
Frame = -1
Query: 1079 SGGKKKGAAPYRIFNLG 1029
SGGKK+GAA R+FNLG
Sbjct: 334 SGGKKRGAAQLRVFNLG 350
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 986,319,441
Number of Sequences: 1393205
Number of extensions: 24271872
Number of successful extensions: 114726
Number of sequences better than 10.0: 195
Number of HSP's better than 10.0 without gapping: 88577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111490
length of database: 448,689,247
effective HSP length: 124
effective length of database: 275,931,827
effective search space used: 64843979345
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
