Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003695A_C01 KMC003695A_c01
(416 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO59316.1| glutamate decarboxylase [Oryza sativa (japonica c... 38 0.026
ref|NP_178310.1| glutamate decarboxylase; protein id: At2g02010.... 37 0.044
gb|AAK38667.1|AF353615_1 glutamate decarboxylase isozyme 4 [Nico... 37 0.058
sp|Q07346|DCE_PETHY Glutamate decarboxylase (GAD) gi|1076648|pir... 36 0.098
gb|AAL16126.1|AF428294_1 At1g65960/F12P19_12 [Arabidopsis thaliana] 36 0.098
>gb|AAO59316.1| glutamate decarboxylase [Oryza sativa (japonica cultivar-group)]
Length = 492
Score = 38.1 bits (87), Expect = 0.026
Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Frame = -1
Query: 413 SRTLAECLVLDIENVVHELE----KLHPKYPAKTINIKEKKSAFDARRKI 276
SRTLAE LVLDIE V+++L+ +L P P + + KKS + +R +
Sbjct: 426 SRTLAERLVLDIEKVMYQLDALPSRLMPPVPPAPLLVVAKKSELETQRSV 475
>ref|NP_178310.1| glutamate decarboxylase; protein id: At2g02010.1, supported by
cDNA: gi_13605709 [Arabidopsis thaliana]
gi|25290897|pir||H84431 probable glutamate decarboxylase
[imported] - Arabidopsis thaliana
gi|4406789|gb|AAD20099.1| putative glutamate
decarboxylase [Arabidopsis thaliana]
gi|13605710|gb|AAK32848.1|AF361836_1 At2g02010/F14H20.8
[Arabidopsis thaliana] gi|21700891|gb|AAM70569.1|
At2g02010/F14H20.8 [Arabidopsis thaliana]
Length = 493
Score = 37.4 bits (85), Expect = 0.044
Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = -1
Query: 413 SRTLAECLVLDIENVVHELEKLHPKYPAKTINIK---EKKSAFDARRKIIA 270
SRTLAE LV D E V+HEL+ L + AK N K KK+ + +R++ A
Sbjct: 426 SRTLAERLVADFEKVLHELDTLPARVHAKMANGKVNGVKKTPEETQREVTA 476
>gb|AAK38667.1|AF353615_1 glutamate decarboxylase isozyme 4 [Nicotiana tabacum]
Length = 491
Score = 37.0 bits (84), Expect = 0.058
Identities = 23/60 (38%), Positives = 33/60 (54%)
Frame = -1
Query: 413 SRTLAECLVLDIENVVHELEKLHPKYPAKTINIKEKKSAFDARRKIIAPESNKLQKIMAA 234
SRTLAE LVLDI V+HEL+ L + AK +K K+ ++ +N +K + A
Sbjct: 426 SRTLAERLVLDIVKVLHELDTLPARLSAKLEEVKLVKNGKKFELEVQREVTNYWKKFVLA 485
>sp|Q07346|DCE_PETHY Glutamate decarboxylase (GAD) gi|1076648|pir||A48767 glutamate
decarboxylase (EC 4.1.1.15), calmodulin-binding - garden
petunia gi|294112|gb|AAA33709.1| glutamate decarboxylase
gi|309680|gb|AAA33710.1| glutamate decarboxylase
Length = 500
Score = 36.2 bits (82), Expect = 0.098
Identities = 20/39 (51%), Positives = 26/39 (66%)
Frame = -1
Query: 413 SRTLAECLVLDIENVVHELEKLHPKYPAKTINIKEKKSA 297
SRTLAE LV DIE V+HEL+ L + AK +E+ +A
Sbjct: 426 SRTLAERLVRDIEKVLHELDTLPARVNAKLAVAEEQAAA 464
>gb|AAL16126.1|AF428294_1 At1g65960/F12P19_12 [Arabidopsis thaliana]
Length = 494
Score = 36.2 bits (82), Expect = 0.098
Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = -1
Query: 413 SRTLAECLVLDIENVVHELEKLHPKYPAK------TINIKEKKSAFDARRKII 273
SRTLAE LV DI V+HEL+ L K K N+KEKK + ++I
Sbjct: 425 SRTLAERLVADISKVLHELDTLPSKISKKMGIEGIAENVKEKKMEKEILMEVI 477
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 301,917,500
Number of Sequences: 1393205
Number of extensions: 5460093
Number of successful extensions: 13900
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 13635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13899
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
