KMC003694A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC003694A_C01 KMC003694A_c01
actcaaccagcttctgctTAAAAATGGTGATGGCTCAAGTAAAATTTATAAGTGAAAAAT
AAAAATTGAACACAAGAACAAGGCTACCACATGATAACCAAGCAGAATCAACATAACATT
TTTATATATCATGATATATGTGACACTGAATAAGGAAAGTCCCAGTTTCAAAACGGAAAC
TTGAAATCTATGACAGACAAGAAAACAATTAGACCCCAACCCCAAAGATTTTATAAACAA
AATTGCAAAATGAAGGCATGGTTCATGCACCAGTGGCGGCGACATCAGATTCCAATGATT
TTCCCGGAAACCCACTAAAATCTGGCGCCGTTTTCTTCTCATTCTTTCTCCCATCAGTGT
CCTTCCCTTTGACTACACTCTTCTCAATCTTTCTGTACCTTCCACCCCCGATTTCTCGCC
GGAGATCCTCCACAGCGCTCCTCAGCGACCCGTTCTCCAATTGCAGCACCTCCATCTGCC
TCTTCACCGCCAAGCACGCCTCCGCCACATCAGAACCCGCCACAAACCCCGAGCCCTCAC
TAGCTC
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003694A_C01 KMC003694A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_133474.2| similar to FLJ00034 protein [Homo sapiens] [Mus... 46 3e-04
pir||T09854 proline-rich cell wall protein - upland cotton gi|43... 45 6e-04
pir||T10737 extensin-like cell wall protein - sea-island cotton ... 45 6e-04
ref|XP_046313.3| similar to FLJ00034 protein [Homo sapiens] gi|9... 44 0.001
dbj|BAB15734.1| FLJ00034 protein [Homo sapiens] 44 0.001
>ref|XP_133474.2| similar to FLJ00034 protein [Homo sapiens] [Mus musculus]
Length = 350
Score = 45.8 bits (107), Expect = 3e-04
Identities = 24/59 (40%), Positives = 31/59 (51%), Gaps = 5/59 (8%)
Frame = +1
Query: 376 HSSQSFCTFHPRFLAGD-----PPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
H+S+ C+ H GD PP SSA+ SP +P S+S P PPP PP P+P
Sbjct: 166 HASRPACSRHLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPPPPPPPPPPALPAP 224
>pir||T09854 proline-rich cell wall protein - upland cotton
gi|435039|gb|AAA79360.1| proline-rich cell wall protein
Length = 214
Score = 45.1 bits (105), Expect = 6e-04
Identities = 20/40 (50%), Positives = 21/40 (52%)
Frame = +1
Query: 418 AGDPPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
A PP P A PP AS PP+TPPP PP TP P
Sbjct: 96 ASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPP 135
Score = 44.3 bits (103), Expect = 0.001
Identities = 19/37 (51%), Positives = 20/37 (53%)
Frame = +1
Query: 427 PPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
PP P A PP AS PP+TPPP PP TP P
Sbjct: 89 PPATPPPASPPPATPPPASPPPATPPPASPPPATPPP 125
Score = 43.9 bits (102), Expect = 0.001
Identities = 20/42 (47%), Positives = 25/42 (58%), Gaps = 5/42 (11%)
Frame = +1
Query: 427 PPQRSS-----ATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
PP SS A+ P++ PP +S PP+TPPP PP TP P
Sbjct: 64 PPPTSSPPPVTASPPPVSTPPPSSPPPATPPPASPPPATPPP 105
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/40 (47%), Positives = 22/40 (54%)
Frame = +1
Query: 418 AGDPPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
A PP P A+PP A+ PP+TPPP PP TP P
Sbjct: 101 ATPPPASPPPATPPPASPPPATPPPATPPPATPPPATPPP 140
Score = 42.0 bits (97), Expect = 0.005
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 418 AGDPPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
A PP P A+PP A+ PP++PPP PP TP P
Sbjct: 91 ATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPP 130
Score = 41.6 bits (96), Expect = 0.006
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +1
Query: 379 SSQSFCTFHPRFLAGDPPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
SS T P ++ PP P A+PP A+ PP++PPP PP +P P
Sbjct: 68 SSPPPVTASPPPVSTPPPSSPPPATPPPASPPPATPPPASPPPATPPPASPPP 120
Score = 41.2 bits (95), Expect = 0.008
Identities = 20/45 (44%), Positives = 23/45 (50%), Gaps = 9/45 (20%)
Frame = +1
Query: 430 PQRSSATRSPIAAPPSASSPP---------STPPPHQNPPQTPSP 537
P +AT P++ PP SSPP STPPP PP TP P
Sbjct: 51 PPTPTATPPPVSTPPPTSSPPPVTASPPPVSTPPPSSPPPATPPP 95
Score = 37.4 bits (85), Expect = 0.12
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Frame = +1
Query: 424 DPPQRSSATRSPIAA--PPSASSPPS---TPPPHQNPPQTPSP 537
+PP + AT +P A+ PP+ +PP+ TPPP PP T SP
Sbjct: 28 NPPTSTPATPTPPASTPPPTTQAPPTPTATPPPVSTPPPTSSP 70
Score = 34.3 bits (77), Expect = 1.0
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 418 AGDPPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQ-TPSP 537
A PP + A +P A PP P STPPP +PP T SP
Sbjct: 41 ASTPPPTTQAPPTPTATPP----PVSTPPPTSSPPPVTASP 77
>pir||T10737 extensin-like cell wall protein - sea-island cotton
gi|451544|gb|AAA79364.1| proline-rich cell wall protein
Length = 214
Score = 45.1 bits (105), Expect = 6e-04
Identities = 20/40 (50%), Positives = 21/40 (52%)
Frame = +1
Query: 418 AGDPPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
A PP P A PP AS PP+TPPP PP TP P
Sbjct: 96 ASPPPATPPPASPPPATPPPASPPPATPPPATPPPATPPP 135
Score = 44.3 bits (103), Expect = 0.001
Identities = 19/37 (51%), Positives = 20/37 (53%)
Frame = +1
Query: 427 PPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
PP P A PP AS PP+TPPP PP TP P
Sbjct: 89 PPATPPPASPPPATPPPASPPPATPPPASPPPATPPP 125
Score = 43.9 bits (102), Expect = 0.001
Identities = 20/42 (47%), Positives = 25/42 (58%), Gaps = 5/42 (11%)
Frame = +1
Query: 427 PPQRSS-----ATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
PP SS A+ P++ PP +S PP+TPPP PP TP P
Sbjct: 64 PPPTSSPPPVTASPPPVSTPPPSSPPPATPPPASPPPATPPP 105
Score = 43.5 bits (101), Expect = 0.002
Identities = 19/40 (47%), Positives = 22/40 (54%)
Frame = +1
Query: 418 AGDPPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
A PP P A+PP A+ PP+TPPP PP TP P
Sbjct: 101 ATPPPASPPPATPPPASPPPATPPPATPPPATPPPATPPP 140
Score = 42.0 bits (97), Expect = 0.005
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 418 AGDPPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
A PP P A+PP A+ PP++PPP PP TP P
Sbjct: 91 ATPPPASPPPATPPPASPPPATPPPASPPPATPPPATPPP 130
Score = 41.6 bits (96), Expect = 0.006
Identities = 20/53 (37%), Positives = 27/53 (50%)
Frame = +1
Query: 379 SSQSFCTFHPRFLAGDPPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
SS T P ++ PP P A+PP A+ PP++PPP PP +P P
Sbjct: 68 SSPPPVTASPPPVSTPPPSSPPPATPPPASPPPATPPPASPPPATPPPASPPP 120
Score = 41.2 bits (95), Expect = 0.008
Identities = 20/45 (44%), Positives = 23/45 (50%), Gaps = 9/45 (20%)
Frame = +1
Query: 430 PQRSSATRSPIAAPPSASSPP---------STPPPHQNPPQTPSP 537
P +AT P++ PP SSPP STPPP PP TP P
Sbjct: 51 PPTPTATPPPVSTPPPTSSPPPVTASPPPVSTPPPSSPPPATPPP 95
Score = 35.0 bits (79), Expect = 0.59
Identities = 18/43 (41%), Positives = 25/43 (57%), Gaps = 5/43 (11%)
Frame = +1
Query: 424 DPPQRSSATRSPIAA--PPSASSPPS---TPPPHQNPPQTPSP 537
+PP + A +P A+ PP+ +PP+ TPPP PP T SP
Sbjct: 28 NPPTSTPAPPTPPASTPPPTTQAPPTPTATPPPVSTPPPTSSP 70
Score = 34.3 bits (77), Expect = 1.0
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 418 AGDPPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQ-TPSP 537
A PP + A +P A PP P STPPP +PP T SP
Sbjct: 41 ASTPPPTTQAPPTPTATPP----PVSTPPPTSSPPPVTASP 77
>ref|XP_046313.3| similar to FLJ00034 protein [Homo sapiens]
gi|9438033|gb|AAF87552.1|AF254411_1 ser/arg-rich
pre-mRNA splicing factor SR-A1 [Homo sapiens]
Length = 1312
Score = 43.9 bits (102), Expect = 0.001
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 376 HSSQSFCTFHPRFLAGD-----PPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
+SS+ C H GD PP SSA+ SP +P S+S P PPP PP P+P
Sbjct: 165 NSSRPTCARHLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPPPPPPPAPPAPPAP 223
>dbj|BAB15734.1| FLJ00034 protein [Homo sapiens]
Length = 1343
Score = 43.9 bits (102), Expect = 0.001
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Frame = +1
Query: 376 HSSQSFCTFHPRFLAGD-----PPQRSSATRSPIAAPPSASSPPSTPPPHQNPPQTPSP 537
+SS+ C H GD PP SSA+ SP +P S+S P PPP PP P+P
Sbjct: 196 NSSRPTCARHLTLGTGDGGPAPPPAPSSASSSPSPSPSSSSPSPPPPPPPPAPPAPPAP 254
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,459,570
Number of Sequences: 1393205
Number of extensions: 12995574
Number of successful extensions: 148979
Number of sequences better than 10.0: 1246
Number of HSP's better than 10.0 without gapping: 71488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122615
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
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clone |
accession |
position |
| 1 |
MF072b11_f |
BP032108 |
1 |
524 |
| 2 |
GNf062d02 |
BP071969 |
10 |
431 |
| 3 |
MWM232h06_f |
AV768272 |
19 |
414 |
| 4 |
MR005e05_f |
BP076321 |
96 |
502 |
| 5 |
MR034b10_f |
BP078604 |
97 |
474 |
| 6 |
GNf079g08 |
BP073225 |
99 |
552 |
| 7 |
MWM031h05_f |
AV765156 |
107 |
314 |
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Lotus japonicus
Kazusa DNA Research Institute