Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003690A_C01 KMC003690A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191790.1| ATP-dependent RNA helicase-like protein; protei... 98 6e-20
ref|NP_182247.1| putative pre-mRNA splicing factor RNA helicase;... 98 8e-20
ref|NP_196994.1| putative protein; protein id: At5g14900.1 [Arab... 81 1e-14
ref|NP_610269.1| CG11107-PA [Drosophila melanogaster] gi|7304234... 68 7e-11
sp|O43143|DD15_HUMAN Putative pre-mRNA splicing factor RNA helic... 68 7e-11
>ref|NP_191790.1| ATP-dependent RNA helicase-like protein; protein id: At3g62310.1
[Arabidopsis thaliana] gi|11346355|pir||T48023
ATP-dependent RNA helicase-like protein - Arabidopsis
thaliana gi|7340702|emb|CAB82945.1| ATP-dependent RNA
helicase-like protein [Arabidopsis thaliana]
gi|21539575|gb|AAM53340.1| ATP-dependent RNA
helicase-like protein [Arabidopsis thaliana]
Length = 726
Score = 98.2 bits (243), Expect = 6e-20
Identities = 44/56 (78%), Positives = 50/56 (88%)
Frame = -1
Query: 574 SRNFIRTVTDIRGEWLVDIAPHYYDLTNFPQCEAKRVLEKLSKKREKEKEEPRTRK 407
SRNFIRTVTDIRGEWLVD+A HYYDL+NFP CEAKRV+EKL KKRE+EKEE + +
Sbjct: 670 SRNFIRTVTDIRGEWLVDVASHYYDLSNFPNCEAKRVIEKLYKKREREKEESKKNR 725
>ref|NP_182247.1| putative pre-mRNA splicing factor RNA helicase; protein id:
At2g47250.1 [Arabidopsis thaliana]
gi|3913425|sp|O22899|DD15_ARATH Putative pre-mRNA
splicing factor ATP-dependent RNA helicase
gi|25409033|pir||H84912 probable pre-mRNA splicing
factor RNA helicase [imported] - Arabidopsis thaliana
gi|2275203|gb|AAB63825.1| putative pre-mRNA splicing
factor RNA helicase [Arabidopsis thaliana]
gi|22135845|gb|AAM91108.1| At2g47250/T8I13.9
[Arabidopsis thaliana] gi|28416499|gb|AAO42780.1|
At2g47250/T8I13.9 [Arabidopsis thaliana]
Length = 729
Score = 97.8 bits (242), Expect = 8e-20
Identities = 44/56 (78%), Positives = 49/56 (86%)
Frame = -1
Query: 574 SRNFIRTVTDIRGEWLVDIAPHYYDLTNFPQCEAKRVLEKLSKKREKEKEEPRTRK 407
+RNFIRTVTDIRGEWLVD+A HYYDL+NFP CEAKR LEKL KKRE+EK E + RK
Sbjct: 674 TRNFIRTVTDIRGEWLVDVAQHYYDLSNFPNCEAKRALEKLYKKREREKNESKNRK 729
>ref|NP_196994.1| putative protein; protein id: At5g14900.1 [Arabidopsis thaliana]
gi|11357725|pir||T51435 hypothetical protein F2G14_20 -
Arabidopsis thaliana gi|9755657|emb|CAC01809.1| putative
protein [Arabidopsis thaliana]
Length = 301
Score = 80.9 bits (198), Expect = 1e-14
Identities = 40/58 (68%), Positives = 44/58 (74%)
Frame = -1
Query: 574 SRNFIRTVTDIRGEWLVDIAPHYYDLTNFPQCEAKRVLEKLSKKREKEKEEPRTRKCK 401
SRNFIRTVT IRGEWLVD+APHYY L NFP EAKRVLE+ KKR+ +E R CK
Sbjct: 243 SRNFIRTVTHIRGEWLVDVAPHYYKLANFPSSEAKRVLERHYKKRKLSEE----RSCK 296
>ref|NP_610269.1| CG11107-PA [Drosophila melanogaster] gi|7304234|gb|AAF59269.1|
CG11107-PA [Drosophila melanogaster]
gi|16197905|gb|AAL13713.1| GM13272p [Drosophila
melanogaster]
Length = 729
Score = 68.2 bits (165), Expect = 7e-11
Identities = 29/49 (59%), Positives = 39/49 (79%)
Frame = -1
Query: 574 SRNFIRTVTDIRGEWLVDIAPHYYDLTNFPQCEAKRVLEKLSKKREKEK 428
++N+IRTVTD++ EWL +AP YYDL NFPQCEAKR LE L ++ E ++
Sbjct: 676 TKNYIRTVTDVKPEWLCCLAPQYYDLNNFPQCEAKRQLELLQQRLETKQ 724
>sp|O43143|DD15_HUMAN Putative pre-mRNA splicing factor RNA helicase (DEAH box protein
15) (ATP-dependent RNA helicase #46)
gi|9624453|gb|AAF90182.1|AF279891_1 dead box protein 15
[Homo sapiens] gi|23273556|gb|AAH35974.1| DEAD/H
(Asp-Glu-Ala-Asp/His) box polypeptide 15 [Homo sapiens]
Length = 795
Score = 68.2 bits (165), Expect = 7e-11
Identities = 28/49 (57%), Positives = 40/49 (81%)
Frame = -1
Query: 574 SRNFIRTVTDIRGEWLVDIAPHYYDLTNFPQCEAKRVLEKLSKKREKEK 428
++N+IRT TDI+ EWLV IAP YYD++NFPQCEAKR L+++ K + ++
Sbjct: 743 TKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQCEAKRQLDRIIAKLQSKE 791
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,851,450
Number of Sequences: 1393205
Number of extensions: 10793065
Number of successful extensions: 30994
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 29642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30907
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
