Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003689A_C01 KMC003689A_c01
(591 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180365.1| hypothetical protein; protein id: At2g27980.1 [... 86 3e-16
ref|NP_190936.1| putative protein; protein id: At3g53680.1 [Arab... 84 1e-15
ref|NP_181288.1| unknown protein; protein id: At2g37520.1 [Arabi... 83 2e-15
ref|NP_181210.2| putative PHD-type zinc finger protein; protein ... 67 1e-10
pir||H84783 probable PHD-type zinc finger protein [imported] - A... 67 1e-10
>ref|NP_180365.1| hypothetical protein; protein id: At2g27980.1 [Arabidopsis thaliana]
gi|25407937|pir||C84679 hypothetical protein At2g27980
[imported] - Arabidopsis thaliana
gi|4510418|gb|AAD21504.1| hypothetical protein
[Arabidopsis thaliana]
Length = 1008
Score = 86.3 bits (212), Expect = 3e-16
Identities = 39/110 (35%), Positives = 67/110 (60%)
Frame = -1
Query: 588 MLCAVLLLDGTVASTALFRLIGPKVAEMPLAASSFDFEGQAVFRCLFDMIVNQLTSLKVT 409
M C +L +D + S +FR+ G ++AE+PL A+S D +GQ F+CLF I L L V
Sbjct: 884 MYCTMLAVDEVIVSVGIFRVFGSELAELPLVATSKDCQGQGYFQCLFACIERLLGFLNVK 943
Query: 408 TLIIPSCEITKEFWRDRYGFSIVSEEEKLFYRESYNMTEFGETVLMHKKL 259
+++P+ + K W D++GF+ +++EE YR+ Y++ F T ++ K +
Sbjct: 944 HIVLPAADEAKSIWTDKFGFTKMTDEEVKEYRKDYSVMIFHGTSMLRKSV 993
>ref|NP_190936.1| putative protein; protein id: At3g53680.1 [Arabidopsis thaliana]
gi|11282417|pir||T45908 hypothetical protein F4P12.380 -
Arabidopsis thaliana gi|6729519|emb|CAB67675.1| putative
protein [Arabidopsis thaliana]
Length = 839
Score = 84.3 bits (207), Expect = 1e-15
Identities = 39/110 (35%), Positives = 68/110 (61%)
Frame = -1
Query: 588 MLCAVLLLDGTVASTALFRLIGPKVAEMPLAASSFDFEGQAVFRCLFDMIVNQLTSLKVT 409
M C VL+++ V S AL R+ G KVAE+P+ A+S +++G+ F+ LF + N L+SL V
Sbjct: 720 MYCLVLMVNSLVVSAALLRIFGQKVAELPIVATSREYQGRGYFQGLFACVENLLSSLNVE 779
Query: 408 TLIIPSCEITKEFWRDRYGFSIVSEEEKLFYRESYNMTEFGETVLMHKKL 259
L++P+ E + W +++GF+ ++E Y+ +T F T ++ KK+
Sbjct: 780 NLLLPAAEEAESIWTNKFGFTKMTEHRLQRYQREVQLTIFKGTSMLEKKV 829
>ref|NP_181288.1| unknown protein; protein id: At2g37520.1 [Arabidopsis thaliana]
gi|7485433|pir||T02518 hypothetical protein At2g37520
[imported] - Arabidopsis thaliana
gi|3236235|gb|AAC23623.1| unknown protein [Arabidopsis
thaliana] gi|20197471|gb|AAM15090.1| unknown protein
[Arabidopsis thaliana]
Length = 825
Score = 83.2 bits (204), Expect = 2e-15
Identities = 37/110 (33%), Positives = 70/110 (63%)
Frame = -1
Query: 588 MLCAVLLLDGTVASTALFRLIGPKVAEMPLAASSFDFEGQAVFRCLFDMIVNQLTSLKVT 409
M C VL+++ V S AL R+ G +VAE+P+ A+S +++G+ F+ L+ + N L+SL V
Sbjct: 702 MYCLVLIVNSLVVSAALLRIFGQEVAELPIVATSREYQGRGYFQGLYACVENLLSSLNVE 761
Query: 408 TLIIPSCEITKEFWRDRYGFSIVSEEEKLFYRESYNMTEFGETVLMHKKL 259
L++P+ E + W ++GF+ +S+++ Y++ +T F T ++ KK+
Sbjct: 762 NLVLPAAEEAESIWTKKFGFTKMSDQQLQEYQKEVQLTIFKGTSMLEKKV 811
>ref|NP_181210.2| putative PHD-type zinc finger protein; protein id: At2g36720.1,
supported by cDNA: gi_20260433 [Arabidopsis thaliana]
gi|20260434|gb|AAM13115.1| putative PHD-type zinc finger
protein [Arabidopsis thaliana]
Length = 1007
Score = 67.4 bits (163), Expect = 1e-10
Identities = 34/107 (31%), Positives = 58/107 (53%), Gaps = 1/107 (0%)
Frame = -1
Query: 582 CAVLLLDGTVASTALFRLIGPKVAEMPLAASSFDFEGQAVFRCLFDMIVNQLTSLKVTTL 403
CAVL ++ TV S L R+ G +VAE+PL A+ + F+ LF I L+SL V ++
Sbjct: 865 CAVLTVNATVVSAGLLRVFGREVAELPLVATRMCSREKGYFQLLFSCIEKLLSSLNVESI 924
Query: 402 IIPSCEITKEFWRDRYGF-SIVSEEEKLFYRESYNMTEFGETVLMHK 265
++P+ E + W +++GF + E+ + + Y M F ++ K
Sbjct: 925 VVPAAEEAEPLWMNKFGFRKLAPEQLSKYIKICYQMVRFKGASMLQK 971
>pir||H84783 probable PHD-type zinc finger protein [imported] - Arabidopsis
thaliana gi|4415917|gb|AAD20148.1| putative PHD-type zinc
finger protein [Arabidopsis thaliana]
Length = 958
Score = 67.4 bits (163), Expect = 1e-10
Identities = 34/107 (31%), Positives = 58/107 (53%), Gaps = 1/107 (0%)
Frame = -1
Query: 582 CAVLLLDGTVASTALFRLIGPKVAEMPLAASSFDFEGQAVFRCLFDMIVNQLTSLKVTTL 403
CAVL ++ TV S L R+ G +VAE+PL A+ + F+ LF I L+SL V ++
Sbjct: 816 CAVLTVNATVVSAGLLRVFGREVAELPLVATRMCSREKGYFQLLFSCIEKLLSSLNVESI 875
Query: 402 IIPSCEITKEFWRDRYGF-SIVSEEEKLFYRESYNMTEFGETVLMHK 265
++P+ E + W +++GF + E+ + + Y M F ++ K
Sbjct: 876 VVPAAEEAEPLWMNKFGFRKLAPEQLSKYIKICYQMVRFKGASMLQK 922
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,736,449
Number of Sequences: 1393205
Number of extensions: 8879541
Number of successful extensions: 21032
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 20445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21026
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
