Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003683A_C01 KMC003683A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191478.1| putative protein; protein id: At3g59190.1 [Arab... 38 0.059
ref|NP_191476.1| putative protein; protein id: At3g59170.1 [Arab... 38 0.077
ref|NP_191475.1| putative protein; protein id: At3g59160.1 [Arab... 37 0.10
dbj|BAB15683.1| unnamed protein product [Homo sapiens] 36 0.29
ref|NP_567169.1| hypothetical protein; protein id: At4g00320.1 [... 36 0.29
>ref|NP_191478.1| putative protein; protein id: At3g59190.1 [Arabidopsis thaliana]
gi|11357651|pir||T48987 hypothetical protein F25L23.50 -
Arabidopsis thaliana gi|7801669|emb|CAB91589.1| putative
protein [Arabidopsis thaliana]
Length = 514
Score = 38.1 bits (87), Expect = 0.059
Identities = 15/37 (40%), Positives = 25/37 (67%)
Frame = -2
Query: 473 PMFHNLTHMQLDYIDCNIDWSDVVELIKNCPKLQVLV 363
P+F+NL H+ ++ D +DW + L+KNCP L+ L+
Sbjct: 328 PVFNNLIHLTVE-TDERVDWESLPILLKNCPNLETLI 363
>ref|NP_191476.1| putative protein; protein id: At3g59170.1 [Arabidopsis thaliana]
gi|11357648|pir||T48985 hypothetical protein F25L23.30 -
Arabidopsis thaliana gi|7801667|emb|CAB91587.1| putative
protein [Arabidopsis thaliana]
Length = 473
Score = 37.7 bits (86), Expect = 0.077
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -2
Query: 473 PMFHNLTHMQLDYIDCNIDWSDVVELIKNCPKLQVLV 363
P+F NL+H+ + D N+ W + +L+KN PKL+ LV
Sbjct: 352 PIFENLSHLTIKS-DPNVGWKPLTKLLKNSPKLETLV 387
>ref|NP_191475.1| putative protein; protein id: At3g59160.1 [Arabidopsis thaliana]
gi|11357644|pir||T48984 hypothetical protein F25L23.20 -
Arabidopsis thaliana gi|7801666|emb|CAB91586.1| putative
protein [Arabidopsis thaliana]
Length = 464
Score = 37.4 bits (85), Expect = 0.10
Identities = 16/37 (43%), Positives = 25/37 (67%)
Frame = -2
Query: 473 PMFHNLTHMQLDYIDCNIDWSDVVELIKNCPKLQVLV 363
P+F+NLTH+ + + W +++L+KN PKLQ LV
Sbjct: 355 PIFNNLTHVTIQSTP-KVGWKSLLKLLKNSPKLQTLV 390
>dbj|BAB15683.1| unnamed protein product [Homo sapiens]
Length = 305
Score = 35.8 bits (81), Expect = 0.29
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Frame = -2
Query: 287 DEFKFDRYIAEDSNEDD-NMQWDFYKLTSSQLELVDESSFYYSSFFYTSF 141
D++ D ++ +D D+ N KLT+SQL+LV ++S Y S YT F
Sbjct: 69 DDYIIDDFVVQDEEGDEENKNQQGEKLTTSQLKLVKQNSLYSFSDHYTHF 118
>ref|NP_567169.1| hypothetical protein; protein id: At4g00320.1 [Arabidopsis
thaliana] gi|7485263|pir||T01539 hypothetical protein
A_IG005I10.18 - Arabidopsis thaliana
gi|2252838|gb|AAB62837.1| A_IG005I10.18 gene product
[Arabidopsis thaliana]
gi|6049880|gb|AAF02795.1|AF195115_15 F5I10.18 gene
product [Arabidopsis thaliana]
gi|7267119|emb|CAB80790.1| similarity to~contains EST
gb:AI998193.1, T76516, R64755 [Arabidopsis thaliana]
Length = 773
Score = 35.8 bits (81), Expect = 0.29
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = -2
Query: 473 PMFHNLTHMQLDYIDCNIDWSDVVELIKNCPKLQVLV 363
P+F NL H+ + +I W + L+KNCP LQ LV
Sbjct: 602 PVFENLIHLTIR-TGVHIGWKSLPHLLKNCPNLQTLV 637
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,940,854
Number of Sequences: 1393205
Number of extensions: 7761631
Number of successful extensions: 20254
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 19518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20224
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
