Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003681A_C01 KMC003681A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43072|HIS7_PEA Imidazoleglycerol-phosphate dehydratase (IGPD... 179 2e-44
sp|O23346|HI7B_ARATH Probable imidazoleglycerol-phosphate dehydr... 175 4e-43
ref|NP_567448.1| imidazoleglycerol-phosphate dehydratase; protei... 175 4e-43
pir||T48893 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19... 174 6e-43
ref|NP_566706.1| Expressed protein; protein id: At3g22422.1, sup... 173 2e-42
>sp|Q43072|HIS7_PEA Imidazoleglycerol-phosphate dehydratase (IGPD)
gi|7436984|pir||T06530 probable
imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) -
garden pea gi|1381086|gb|AAB67738.1|
imidazoleglycerol-phosphate dehydratase
Length = 281
Score = 179 bits (454), Expect = 2e-44
Identities = 88/94 (93%), Positives = 93/94 (98%)
Frame = -1
Query: 584 VSLDLSGRPHLSYDLDIPTQRVGTYDTQLVEHFFQSIVNTSGMTLHIRQLAGKNSHHIIE 405
VSLDLSGRPHLSY+LDIPTQRVGTYDTQ+VEHF QSIVNTSGMTLHIRQLAG+NSHHIIE
Sbjct: 188 VSLDLSGRPHLSYNLDIPTQRVGTYDTQVVEHFLQSIVNTSGMTLHIRQLAGRNSHHIIE 247
Query: 404 ATFKAFARALRQATEHDPRRRGTVPSSKGVLSRS 303
ATFKAFARALRQATE+DPRRRG+VPSSKGVLSRS
Sbjct: 248 ATFKAFARALRQATEYDPRRRGSVPSSKGVLSRS 281
>sp|O23346|HI7B_ARATH Probable imidazoleglycerol-phosphate dehydratase 2 (IGPD 2)
gi|7436978|pir||D71412 probable
imidazoleglycerol-phosphate dehydratase - Arabidopsis
thaliana gi|2244848|emb|CAB10270.1|
imidazoleglycerol-phosphate dehydratase [Arabidopsis
thaliana] gi|7268237|emb|CAB78533.1|
imidazoleglycerol-phosphate dehydratase [Arabidopsis
thaliana]
Length = 259
Score = 175 bits (443), Expect = 4e-43
Identities = 86/94 (91%), Positives = 91/94 (96%)
Frame = -1
Query: 584 VSLDLSGRPHLSYDLDIPTQRVGTYDTQLVEHFFQSIVNTSGMTLHIRQLAGKNSHHIIE 405
VSLDLSGRP+L Y+L+IPTQRVGTYDTQLVEHFFQS+VNTSGMTLHIRQLAGKNSHHIIE
Sbjct: 166 VSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIE 225
Query: 404 ATFKAFARALRQATEHDPRRRGTVPSSKGVLSRS 303
ATFKAFARALRQATE DPRR GT+PSSKGVLSRS
Sbjct: 226 ATFKAFARALRQATESDPRRGGTIPSSKGVLSRS 259
>ref|NP_567448.1| imidazoleglycerol-phosphate dehydratase; protein id: At4g14910.1,
supported by cDNA: gi_15081689, supported by cDNA:
gi_20334841 [Arabidopsis thaliana]
gi|15081690|gb|AAK82500.1| AT4g14910/dl3495c
[Arabidopsis thaliana] gi|20334842|gb|AAM16177.1|
AT4g14910/dl3495c [Arabidopsis thaliana]
Length = 272
Score = 175 bits (443), Expect = 4e-43
Identities = 86/94 (91%), Positives = 91/94 (96%)
Frame = -1
Query: 584 VSLDLSGRPHLSYDLDIPTQRVGTYDTQLVEHFFQSIVNTSGMTLHIRQLAGKNSHHIIE 405
VSLDLSGRP+L Y+L+IPTQRVGTYDTQLVEHFFQS+VNTSGMTLHIRQLAGKNSHHIIE
Sbjct: 179 VSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIE 238
Query: 404 ATFKAFARALRQATEHDPRRRGTVPSSKGVLSRS 303
ATFKAFARALRQATE DPRR GT+PSSKGVLSRS
Sbjct: 239 ATFKAFARALRQATESDPRRGGTIPSSKGVLSRS 272
>pir||T48893 imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) [similarity]
- Thlaspi goesingense (fragment)
gi|3982576|gb|AAC83458.1| imidazoleglycerol phosphate
dehydratase [Thlaspi goesingense]
Length = 274
Score = 174 bits (442), Expect = 6e-43
Identities = 86/94 (91%), Positives = 90/94 (95%)
Frame = -1
Query: 584 VSLDLSGRPHLSYDLDIPTQRVGTYDTQLVEHFFQSIVNTSGMTLHIRQLAGKNSHHIIE 405
VSLDLSGRP+L Y L+IPTQRVGTYDTQLVEHFFQS+VNTSGMTLHIRQLAGKNSHHIIE
Sbjct: 181 VSLDLSGRPYLGYSLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGKNSHHIIE 240
Query: 404 ATFKAFARALRQATEHDPRRRGTVPSSKGVLSRS 303
ATFKAFARALRQATE DPRR GT+PSSKGVLSRS
Sbjct: 241 ATFKAFARALRQATESDPRRGGTIPSSKGVLSRS 274
>ref|NP_566706.1| Expressed protein; protein id: At3g22422.1, supported by cDNA:
39832., supported by cDNA: gi_437212 [Arabidopsis
thaliana] gi|462273|sp|P34047|HI7A_ARATH
Imidazoleglycerol-phosphate dehydratase 1 (IGPD 1)
gi|437213|gb|AAA93196.1| imidazoleglycerolphosphate
dehydratase gi|9293878|dbj|BAB01781.1|
imidazoleglycerol-phosphate dehydratase [Arabidopsis
thaliana] gi|21593529|gb|AAM65496.1|
imidazoleglycerol-phosphate dehydratase [Arabidopsis
thaliana] gi|26452644|dbj|BAC43405.1| putative
imidazoleglycerolphosphate dehydratase [Arabidopsis
thaliana]
Length = 270
Score = 173 bits (438), Expect = 2e-42
Identities = 85/94 (90%), Positives = 91/94 (96%)
Frame = -1
Query: 584 VSLDLSGRPHLSYDLDIPTQRVGTYDTQLVEHFFQSIVNTSGMTLHIRQLAGKNSHHIIE 405
VSLDLSGRP+L Y+L+IPTQRVGTYDTQLVEHFFQS+VNTSGMTLHIRQLAG+NSHHIIE
Sbjct: 177 VSLDLSGRPYLGYNLEIPTQRVGTYDTQLVEHFFQSLVNTSGMTLHIRQLAGENSHHIIE 236
Query: 404 ATFKAFARALRQATEHDPRRRGTVPSSKGVLSRS 303
ATFKAFARALRQATE DPRR GT+PSSKGVLSRS
Sbjct: 237 ATFKAFARALRQATETDPRRGGTIPSSKGVLSRS 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,681,007
Number of Sequences: 1393205
Number of extensions: 10626860
Number of successful extensions: 19791
Number of sequences better than 10.0: 158
Number of HSP's better than 10.0 without gapping: 19318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19730
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
