Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003680A_C01 KMC003680A_c01
(882 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194528.1| putative protein; protein id: At4g27990.1, supp... 155 6e-37
gb|AAM64721.1| unknown [Arabidopsis thaliana] 153 4e-36
ref|NP_566307.1| expressed protein; protein id: At3g07430.1, sup... 152 8e-36
gb|AAM66973.1| unknown [Arabidopsis thaliana] 152 8e-36
ref|NP_486101.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 84 3e-15
>ref|NP_194528.1| putative protein; protein id: At4g27990.1, supported by cDNA:
32397. [Arabidopsis thaliana] gi|7486950|pir||T02900
hypothetical protein T13J8.100 - Arabidopsis thaliana
gi|4455358|emb|CAB36768.1| putative protein [Arabidopsis
thaliana] gi|7269653|emb|CAB79601.1| putative protein
[Arabidopsis thaliana]
Length = 218
Score = 155 bits (393), Expect = 6e-37
Identities = 74/79 (93%), Positives = 76/79 (95%)
Frame = -3
Query: 880 AGLGKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDV 701
AGL KWLDIYSGVLMVRVLLSWFPNIPW+RQPLSAIRDLCDPYLNLFRNIIPPVFDTLDV
Sbjct: 138 AGLSKWLDIYSGVLMVRVLLSWFPNIPWDRQPLSAIRDLCDPYLNLFRNIIPPVFDTLDV 197
Query: 700 SPLLAFAVLGTLGSILQTA 644
SPLLAFAVLGTLGSIL +
Sbjct: 198 SPLLAFAVLGTLGSILNNS 216
>gb|AAM64721.1| unknown [Arabidopsis thaliana]
Length = 218
Score = 153 bits (386), Expect = 4e-36
Identities = 73/79 (92%), Positives = 75/79 (94%)
Frame = -3
Query: 880 AGLGKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDV 701
AGL KWLDIYSGVLMVRVLLSWFPNIPW+ QPLSAIRDLCDPYLNLFRNIIPPVFDTLDV
Sbjct: 138 AGLSKWLDIYSGVLMVRVLLSWFPNIPWDGQPLSAIRDLCDPYLNLFRNIIPPVFDTLDV 197
Query: 700 SPLLAFAVLGTLGSILQTA 644
SPLLAFAVLGTLGSIL +
Sbjct: 198 SPLLAFAVLGTLGSILNNS 216
>ref|NP_566307.1| expressed protein; protein id: At3g07430.1, supported by cDNA:
8898., supported by cDNA: gi_20466761 [Arabidopsis
thaliana] gi|6041841|gb|AAF02150.1|AC009853_10 unknown
protein [Arabidopsis thaliana]
gi|20466762|gb|AAM20698.1| unknown protein [Arabidopsis
thaliana]
Length = 232
Score = 152 bits (383), Expect = 8e-36
Identities = 71/75 (94%), Positives = 74/75 (98%)
Frame = -3
Query: 877 GLGKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVS 698
G+ KWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVS
Sbjct: 153 GIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVS 212
Query: 697 PLLAFAVLGTLGSIL 653
PLLAFAVLGTLGSI+
Sbjct: 213 PLLAFAVLGTLGSIV 227
>gb|AAM66973.1| unknown [Arabidopsis thaliana]
Length = 234
Score = 152 bits (383), Expect = 8e-36
Identities = 71/75 (94%), Positives = 74/75 (98%)
Frame = -3
Query: 877 GLGKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVS 698
G+ KWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPP+FDTLDVS
Sbjct: 155 GIKKWLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPIFDTLDVS 214
Query: 697 PLLAFAVLGTLGSIL 653
PLLAFAVLGTLGSI+
Sbjct: 215 PLLAFAVLGTLGSIV 229
>ref|NP_486101.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25305475|pir||AG2063
hypothetical protein asl2061 [imported] - Nostoc sp.
(strain PCC 7120) gi|17131152|dbj|BAB73760.1|
ORF_ID:asl2061~hypothetical protein [Nostoc sp. PCC
7120]
Length = 92
Score = 84.0 bits (206), Expect = 3e-15
Identities = 39/73 (53%), Positives = 54/73 (73%)
Frame = -3
Query: 865 WLDIYSGVLMVRVLLSWFPNIPWERQPLSAIRDLCDPYLNLFRNIIPPVFDTLDVSPLLA 686
++ IYS +L++RVLL+WFP I W QP +A+ + DPYLNLFR+IIPP+ +D SP+LA
Sbjct: 11 FVTIYSYLLIIRVLLTWFPQIDWYNQPFAALSQITDPYLNLFRSIIPPL-GGMDFSPILA 69
Query: 685 FAVLGTLGSILQT 647
F VL G +L+T
Sbjct: 70 FLVLNLTGDLLRT 82
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 736,055,009
Number of Sequences: 1393205
Number of extensions: 16087714
Number of successful extensions: 45356
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 43194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45277
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 47660818527
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
