Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003679A_C01 KMC003679A_c01
(411 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_182274.1| putative AP2 domain transcription factor; prote... 52 1e-06
pir||T07784 AP2 domain protein homolog - potato gi|1688233|gb|AA... 51 4e-06
gb|AAO34704.1| ethylene response factor 2 [Lycopersicon esculentum] 49 2e-05
dbj|BAB92777.1| B1011A07.25 [Oryza sativa (japonica cultivar-gro... 41 0.003
gb|AAK95687.1| transcription factor JERF1 [Lycopersicon esculentum] 39 0.015
>ref|NP_182274.1| putative AP2 domain transcription factor; protein id: At2g47520.1,
supported by cDNA: gi_18491272 [Arabidopsis thaliana]
gi|7487565|pir||T00432 probable AP2 domain transcription
factor [imported] - Arabidopsis thaliana
gi|2529675|gb|AAC62858.1| putative AP2 domain
transcription factor [Arabidopsis thaliana]
gi|18491273|gb|AAL69461.1| At2g47520/T30B22.18
[Arabidopsis thaliana]
Length = 171
Score = 52.4 bits (124), Expect = 1e-06
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Frame = -2
Query: 347 EAEEEGVGNEER--KTNQVEKLSEELMAFDDYMGFYQVPYYEEQSNASVHETVVGDLWNF 174
EA+ + GN+ NQVE LSE+LMA +DYM FYQ+P ++QS T +G+LW++
Sbjct: 113 EADTKPGGNQNELISENQVESLSEDLMALEDYMRFYQIPVADDQS-----ATDIGNLWSY 167
>pir||T07784 AP2 domain protein homolog - potato gi|1688233|gb|AAC29516.1| DNA
binding protein homolog [Solanum tuberosum]
Length = 298
Score = 50.8 bits (120), Expect = 4e-06
Identities = 33/96 (34%), Positives = 51/96 (52%), Gaps = 16/96 (16%)
Frame = -2
Query: 410 FAYDLNPESCAGFGSASGSSVEAEEEGVGN--------EERKTNQVEKLSEELMAFDDYM 255
FA S + + +VE EE+ V N EE+ ++V+ LS+ELMA++ M
Sbjct: 175 FAIANKNSSGSAYNGIEDQNVEGEEQTVKNSNNRIVEEEEKTEDEVQILSDELMAYESLM 234
Query: 254 GFYQVPYYEEQSNAS----VHETVVG----DLWNFD 171
FY++PY + QS A+ +T VG +LW+FD
Sbjct: 235 KFYEIPYVDGQSVAATVNPAADTEVGGGSMELWSFD 270
>gb|AAO34704.1| ethylene response factor 2 [Lycopersicon esculentum]
Length = 260
Score = 48.5 bits (114), Expect = 2e-05
Identities = 33/90 (36%), Positives = 47/90 (51%), Gaps = 15/90 (16%)
Frame = -2
Query: 395 NPESCAGFGSASGSSVEAEE-------EGVGNEERKTNQVEKLSEELMAFDDYMGFYQVP 237
N E F S +G EE V EE+ ++V+ LS+ELMA++ M FY++P
Sbjct: 159 NVEPVMEFASYNGIEDGGEEMVKNLNNRVVEEEEKTEDEVQILSDELMAYESLMKFYEIP 218
Query: 236 YYEEQSNAS----VHETVVG----DLWNFD 171
Y + QS A+ ET VG +LW+FD
Sbjct: 219 YVDGQSVAATVNPAAETAVGGGSMELWSFD 248
>dbj|BAB92777.1| B1011A07.25 [Oryza sativa (japonica cultivar-group)]
Length = 207
Score = 41.2 bits (95), Expect = 0.003
Identities = 25/66 (37%), Positives = 37/66 (55%), Gaps = 3/66 (4%)
Frame = -2
Query: 350 VEAEEEGVGNEERKTNQVEKLSEELMAFDDYMGFYQVPYYE--EQSNASVHETVV-GDLW 180
+EA EG G +++V++LSEEL+A+++YM F +PY E S A E LW
Sbjct: 138 MEAVSEGAG--ACSSDEVKELSEELLAYENYMSFLGIPYMEGGAASAAGAEEAAAPAGLW 195
Query: 179 NFDAEE 162
F+ E
Sbjct: 196 TFEDYE 201
>gb|AAK95687.1| transcription factor JERF1 [Lycopersicon esculentum]
Length = 372
Score = 38.9 bits (89), Expect = 0.015
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 10/55 (18%)
Frame = -2
Query: 305 NQVEKLSEELMAFDDYMGFYQVPYYEEQSNASVHETV----------VGDLWNFD 171
N V LSEEL AF+ M F Q+PY E +ASV + DLW+FD
Sbjct: 308 NTVNTLSEELSAFESQMKFLQIPYLEGNWDASVDAFLNTSAIQDGGNAMDLWSFD 362
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 363,500,178
Number of Sequences: 1393205
Number of extensions: 7860306
Number of successful extensions: 34005
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 31962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33601
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 7023606888
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
