Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003676A_C01 KMC003676A_c01
(569 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF20216.1|AC012395_3 putative translation initiation factor ... 100 2e-20
gb|AAD52847.2|AF137288_1 putative translation initiation factor ... 99 3e-20
gb|AAK98757.1|AC091734_14 Putative translation initiation facto... 94 2e-18
ref|NP_570020.1| CG2677-PA [Drosophila melanogaster] gi|3255946|... 61 1e-08
gb|EAA03953.1| agCP3760 [Anopheles gambiae str. PEST] 58 7e-08
>gb|AAF20216.1|AC012395_3 putative translation initiation factor EIF-2B beta subunit
[Arabidopsis thaliana]
Length = 407
Score = 100 bits (248), Expect = 2e-20
Identities = 46/55 (83%), Positives = 50/55 (90%)
Frame = -3
Query: 567 LDSASGAGSLHVVNPTFDYVPPKLVSLFITDKGGHNPSYMYRLIADYYSSDDLVV 403
LD +G+GSL VVNPTFDYVPP LVSLFITD GGHNPSYMYRLIADYYS+DDLV+
Sbjct: 353 LDFGAGSGSLQVVNPTFDYVPPNLVSLFITDTGGHNPSYMYRLIADYYSADDLVM 407
>gb|AAD52847.2|AF137288_1 putative translation initiation factor 2B beta subunit [Nicotiana
tabacum]
Length = 415
Score = 99.4 bits (246), Expect = 3e-20
Identities = 46/55 (83%), Positives = 49/55 (88%)
Frame = -3
Query: 561 SASGAGSLHVVNPTFDYVPPKLVSLFITDKGGHNPSYMYRLIADYYSSDDLVVKQ 397
S+SG+ LHVVNP FDYVPP LVSLFITD GGHNPSYMYRLIADYYS+DD VVKQ
Sbjct: 357 SSSGSPLLHVVNPAFDYVPPNLVSLFITDTGGHNPSYMYRLIADYYSADDFVVKQ 411
>gb|AAK98757.1|AC091734_14 Putative translation initiation factor 2B beta subunit [Oryza
sativa]
Length = 414
Score = 93.6 bits (231), Expect = 2e-18
Identities = 45/58 (77%), Positives = 52/58 (89%)
Frame = -3
Query: 552 GAGSLHVVNPTFDYVPPKLVSLFITDKGGHNPSYMYRLIADYYSSDDLVVKQRRATGS 379
G L+VVNPTFDYVPPKLVSLFITD GGH+PSYMYRLIA+YYS+DDLVV+ R++T S
Sbjct: 358 GTPLLNVVNPTFDYVPPKLVSLFITDTGGHSPSYMYRLIAEYYSADDLVVR-RKSTSS 414
>ref|NP_570020.1| CG2677-PA [Drosophila melanogaster] gi|3255946|emb|CAA19648.1|
/match=(desc:''TRANSLATION INITIATION FACTOR EIF-2B BETA
SUBUNIT (EIF-2B GDP-GTP EXCHANGE FACTOR)'',
species:''Rattus norvegicus (Rat)'',
ranges:(query:11048..11176,
target:SWISS-PROT::Q62818:57..99, score:''96.00''),
(query:11240..11470, target:SWISS-PROT::Q62818:114..190,
score:''164.00''), (query:11618..11887,
target:SWISS-PROT::Q62818:208..297, score:''267.00''),
(query:11906..11974, target:SWISS-PROT::Q62818:305..327,
score:''89.00''), (query:12045..12104,
target:SWISS-PROT::Q62818:329..348, score:''>
gi|7290350|gb|AAF45809.1| CG2677-PA [Drosophila
melanogaster] gi|11559594|gb|AAG38015.1| eukaryotic
initiation factor eIF2B beta subunit [Drosophila
melanogaster] gi|22324206|emb|CAC82992.1| eIF2B-beta
protein [Drosophila melanogaster]
Length = 352
Score = 60.8 bits (146), Expect = 1e-08
Identities = 25/44 (56%), Positives = 35/44 (78%)
Frame = -3
Query: 534 VVNPTFDYVPPKLVSLFITDKGGHNPSYMYRLIADYYSSDDLVV 403
V +P FDYVPP+LV+LFI++ GGH PSY+YRL+ + Y +DL +
Sbjct: 309 VYSPMFDYVPPELVTLFISNTGGHAPSYVYRLLTELYHPEDLEI 352
>gb|EAA03953.1| agCP3760 [Anopheles gambiae str. PEST]
Length = 329
Score = 58.2 bits (139), Expect = 7e-08
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = -3
Query: 528 NPTFDYVPPKLVSLFITDKGGHNPSYMYRLIADYYSSDD 412
NP FDYVPP+LV+LFIT+ G + PSY+YRLI + Y DD
Sbjct: 288 NPLFDYVPPELVTLFITNNGTNAPSYIYRLIGELYHPDD 326
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 518,625,318
Number of Sequences: 1393205
Number of extensions: 11729060
Number of successful extensions: 28850
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 27615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28761
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
