Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003674A_C01 KMC003674A_c01
(691 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM97020.1| subtilisin-like protein [Arabidopsis thaliana] 57 2e-07
ref|NP_197467.1| subtilisin-like protein; protein id: At5g19660.... 57 2e-07
gb|EAA16247.1| hypothetical protein [Plasmodium yoelii yoelii] 34 2.2
gb|EAA38901.1| GLP_180_47974_47309 [Giardia lamblia ATCC 50803] 32 6.3
ref|XP_141528.1| similar to embryonic poly(A) binding protein [X... 32 6.3
>gb|AAM97020.1| subtilisin-like protein [Arabidopsis thaliana]
Length = 1038
Score = 57.0 bits (136), Expect = 2e-07
Identities = 32/56 (57%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = -2
Query: 606 GLFYGDELDAPMLVGSHWLYPAVFAATGIL-LLSFWRIRQRRRRRRKGASSSGRLA 442
GLF DE+D P LV + W+ A A+G+L LLS WRIRQ+R RRR+ AS S RLA
Sbjct: 984 GLFNRDEIDMPFLVPTRWIVLAGVVASGVLVLLSIWRIRQKRGRRRR-ASGSNRLA 1038
>ref|NP_197467.1| subtilisin-like protein; protein id: At5g19660.1 [Arabidopsis
thaliana]
Length = 1038
Score = 57.0 bits (136), Expect = 2e-07
Identities = 32/56 (57%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Frame = -2
Query: 606 GLFYGDELDAPMLVGSHWLYPAVFAATGIL-LLSFWRIRQRRRRRRKGASSSGRLA 442
GLF DE+D P LV + W+ A A+G+L LLS WRIRQ+R RRR+ AS S RLA
Sbjct: 984 GLFNRDEIDMPFLVPTRWIVLAGVVASGVLVLLSIWRIRQKRGRRRR-ASGSNRLA 1038
>gb|EAA16247.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 621
Score = 33.9 bits (76), Expect = 2.2
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +3
Query: 351 RELVTMLILHGNFFGGYFYN--SC*CWTIINWLLIYQKSLLLSFVDVSFGEYAKNSTTKY 524
+E+ +L + F Y N C C+T +N+ IYQK+ L+ V+ Y +N TKY
Sbjct: 523 KEIKKLLKFNEKFIYDYVINMKKCMCYTCLNYPFIYQKTDLIKIVN-----YYRNLNTKY 577
>gb|EAA38901.1| GLP_180_47974_47309 [Giardia lamblia ATCC 50803]
Length = 221
Score = 32.3 bits (72), Expect = 6.3
Identities = 18/55 (32%), Positives = 23/55 (41%)
Frame = +1
Query: 472 PSSTSPLANTPKTQQQNTGCCKNSRIKPVTTNQHRCIKLISIEQAQIPVPPEGHP 636
PS SPL + QQ T CK + P + R + S + P PP G P
Sbjct: 119 PSGQSPLQTEHQGSQQPTDRCKGHALLPRRRSAARRVWRTSYQHTHSPGPPRGTP 173
>ref|XP_141528.1| similar to embryonic poly(A) binding protein [Xenopus laevis] [Mus
musculus]
Length = 579
Score = 32.3 bits (72), Expect = 6.3
Identities = 20/59 (33%), Positives = 29/59 (48%), Gaps = 1/59 (1%)
Frame = +1
Query: 448 STRRACSFPS-STSPLANTPKTQQQNTGCCKNSRIKPVTTNQHRCIKLISIEQAQIPVP 621
ST +A + S S +P+ P+ Q G S ++P++T QH CI L Q VP
Sbjct: 408 STAQAVYYSSGSITPMQPDPRWTAQPHGPPSASVVQPLSTTQHPCIHLRGASQVSSQVP 466
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 548,982,251
Number of Sequences: 1393205
Number of extensions: 11749664
Number of successful extensions: 37861
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 30815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37135
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31118763720
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
