Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003672A_C01 KMC003672A_c01
(619 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC09582.1| ethylene insensitive (EIN3/EIL)-like transcripti... 51 1e-05
ref|NP_386329.1| PUTATIVE FERRICHROME-IRON RECEPTOR PRECURSOR PR... 32 5.0
gb|EAA34767.1| predicted protein [Neurospora crassa] 32 6.6
>emb|CAC09582.1| ethylene insensitive (EIN3/EIL)-like transcription regulator [Fagus
sylvatica]
Length = 594
Score = 50.8 bits (120), Expect = 1e-05
Identities = 32/85 (37%), Positives = 41/85 (47%), Gaps = 13/85 (15%)
Frame = -1
Query: 619 NDAVSMPAAAHMKSDEIPGGDLHYFGKDPFQNELDRPIDHAL------FGLDFGGLNSP- 461
N+ P + + G + KDPF NE RP+D LD GGLNSP
Sbjct: 510 NEPQIRPEEVGLHVPTLHGSSTELYVKDPFNNEQHRPVDSQFGSAIDSLSLDCGGLNSPF 569
Query: 460 PFDIG------DFLGDDEMIQYFGA 404
+DI DFL D+++IQYFGA
Sbjct: 570 HYDIDGLSSLEDFLHDEDLIQYFGA 594
>ref|NP_386329.1| PUTATIVE FERRICHROME-IRON RECEPTOR PRECURSOR PROTEIN [Sinorhizobium
meliloti] gi|15075246|emb|CAC46802.1| PUTATIVE
FERRICHROME-IRON RECEPTOR PRECURSOR PROTEIN
[Sinorhizobium meliloti]
Length = 733
Score = 32.3 bits (72), Expect = 5.0
Identities = 17/52 (32%), Positives = 26/52 (49%)
Frame = -1
Query: 568 PGGDLHYFGKDPFQNELDRPIDHALFGLDFGGLNSPPFDIGDFLGDDEMIQY 413
PGG ++ K P LD P+ + G++ G FD+ D L DD ++Y
Sbjct: 177 PGGIINLISKRP----LDEPLYYTEVGINSNGNAFTGFDVNDKLNDDGTVRY 224
>gb|EAA34767.1| predicted protein [Neurospora crassa]
Length = 534
Score = 32.0 bits (71), Expect = 6.6
Identities = 19/45 (42%), Positives = 28/45 (62%)
Frame = -3
Query: 296 WQVINVQNLKN*SMDFVLLITDPIFISINMFGVPM*ICQLWGWLE 162
+Q + ++LKN +DFV ++TDP IS N +G M C W W+E
Sbjct: 354 YQGLTQEDLKN--LDFVTVLTDP--ISGNQYG--MLTCGYWYWVE 392
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 516,786,134
Number of Sequences: 1393205
Number of extensions: 11141584
Number of successful extensions: 23522
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22867
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23515
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
